Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g02555 ATGGCTTTCTTTAGGAACTTTGTAAATGATACAGTCTCACATGGTGCTATGGAAGATAAAGGCCTAGGGCAGGATGCTAATAATATTCGTAGATCAGTAGGTAATGAATGTACTGATGCAACTTCTAGCGAGAAAGAATTCGACATGAACTTAGAGGCACAATATGAGAGTGATGGTGGGCCAGATGGTGCATGCAGACTGCAAAATGAGGGAACAGCTGACGATGGAGATGGTTTGAGAGAATCCAACTTACAGGCTTCTGGTAGTAAAGCATCTACAGTTGGAAGGTGGGGTTCAACATTTTGGAAGGACTGCCAACCATCGTGTCCTCAAAATGGTTTTGAATCCGGTAAGGAATCCAAAAGTGGATCAGACTATAGAAATGCAGGGGGATCTGAAGATAATTCTGTGGATGGAGAAACAGGTAGGCTAGACTCGGAAGATGATGATGAACAAAAGGAGGCAGGTAAAGGTCGAAGAAGCCACTCTGATGTTCCTGCAGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGATCAAAGTGACTCATTGCATTATAATGGGATTCAAAAGTCCACTGGAGGGAATTCATGGCCTCAACAGAAGTCTACTTCTGTGAAAAAACCTGTGCGTAGGAAATCTAGGATTTCAGATGATGATGGTGATGGTGATGTTGATTATGAAGAGGAGGATGAAGTAGACGAAGATGATCCTGATGATGCAGATTTTGAGCCTGTCGAGAGTAGCCATACCTTAAAAAAGGATAAAGATTGGGAAGGTGAAGGATCGGATGAAAATGATGACAGTGGTGAAAGCCTAGATGTTTCTGATGATGACGAATCTTTCTATACTAAAAAATCCAAGGGAAGGCAACAAGGTAAGGTTAGAAAAAATATAAAATCTACCAGAGATCGCAAAGCATGTGTTGCATCTAGCAGACAAAGAAGATTAAAATCATCTTTTGAAGACAACGAGTCTACAACAGAGGATTCTGACAGTGTTAGCGATGACGATTTTAAAAGCACAAGAAAGAGAAGTTTCAATGTTCGGAAGAATAACAGCCGCTTTTCCGTAACCACAAGTTTTTCTGCGCACAACAGTGACGTTCGCACTTCTAGCAGGGCTGTTAGGAAGATATCATATGTTGAAAGTGATGGAAGTGAAGAAGCTGATGATGGGAAGAAGAAAAAGTCTCAAAAGGAAGAAATTGAAGAGGATGATGGTGACTCTATTGAAAAGGTGCTTTGGCATCAGCTGAAGGGCACAGCTGAAGACGCTCAAAGCAATAATAGATCGACAGAGCCTGTGTTAATGAGTCACTTGTTTGATTCTGAATTTGATTGGAATGAGATTGAATTTTTGATAAAATGGAAGGGGCAATCTCATTTGCACTGTCAATGGAAGTCTTTCGCAGAGCTACAAAATCTAAGTGGCTTTAAGAAGGTTTTAAATTATACAAAGAAAATAATGGAGGACATCAGGTACCGGAGAGCAATCTCAAGAGAGGAGATTGAGGTCTATGATGTGAGCAAGGAGATGGATTTAGAAATTATCAGGCAGAACAGTCAGGTGGAAAGAATAATTGCAGATAGGATAAGTAAAGATAATTCTGGCAATGTTGTCCCAGAATACCTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGTGACTTGGGAAAAGGACATTGATATCGCTTTTGCTCAACATTCGATCGATGAGTATAAGGCTCGAGAGGCTGCAATGTCAGTTCAAGGAAAGGTGGTAGATTCCCAGCGCAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAGCCTGAATGGTTGATGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGCTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGGAAAACTGTTCAATCAGTATCGATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGCCCTTTTCTTGTAGTTGTGCCGCTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTCGGTACTCGAGCAAGTCGAGAGGTTTGTCAACAGTATGAGTTTTATAATGACAAAAAGCCTGGTAAACCAATAAAATTCAATGCACTGTTGACTACATATGAAGTAATTTTGAAAGATAAGGCTGTTCTCTCCAAGATCAAATGGAATTATCTGATGGTAGACGAGGCTCATAGACTAAAAAATAGCGAGGCACAGTTGTATACATCACTTTTAGAATTTAGCACCAAGAATAAGTTGCTCATCACCGGCACTCCTTTACAAAACAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATCCTACCAAATTCAAGAGCAAGGATGAGTTTGTTCAAAACTATAAGAATTTGAGTTCTTTCCATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGACCACACATACTTAGAAGAGTTATCAAAGATGTAGAGAAATCTTTACCCCCCAAAATTGAGCGCATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAACTTCCAAAATTTAAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTAGAATTGAAAAAGTGTTGCAACCATCCCTTCCTATTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCTGGAGGTAGCGACAACAGTAAACTTGAGAGAATTGTCTTTAGCAGTGGGAAGCTTGTGATACTTGACAAGCTTCTTGTTAGATTGCACGAAACCAAGCACCGCGTTCTGATTTTCTCCCAGATGGTTAGGATGTTGGATATATTGGCACAATATTTGTCACTTCGAGGGTTTCAATTTCAAAGACTTGATGGGAGCACAAAATCTGAGCTGCGACAGCAGGCAATGGAGCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGGGCAGGAGGTCTAGGTATCAACCTTGCCACGGCAGATACTGTCATTATATTTGATTCAGACTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGATGTTGTCAACATATATAGATTTGTGACAAGCAAAAGTGTCGAAGAAGATATTCTGGAGCGTGCTAAGAAGAAGATGGTTCTGGACCACTTGGTGATTCAAAAACTGAATGCAGAAGGTAGACTGGAGAAGAAAGAAGTCAAAAAAGGAGGAAGTTACTTTGATAAAAACGAGCTGTCTGCAATCTTACGATTTGGAGCGGAAGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACGCCTCTTAGGTATGAATATAGATGAGATTCTTGAAAGAGCTGAGAAGGTTGAAGAGAAGACAGATGAAGATGAACAAGGGAATGAGTTATTAAGTGCATTTAAGGTTGCTAATTTTTGCAATGATGAAGATGATGCAAGTTTCTGGAGTCGTTGGATAAAGCCCGATGCTGCATTCCAAGCAGAGGAAGCTCTTGCCCCGCGTTCTGCAAGAAATATTAAAAGCTATGCCGAGGCTGATCCATCTGAAAGGAGTAATAAAAGGAAAAAGAAGGAACCTGAGCCACCTGAACGAGTTCAGAAACGCCGCAAAGCAGAGCATTTGGCTCCTGCAGTACCAATGGTTGATGGAGCCTCTGTCCAAGTGAGAAGTTGGTCATATGGGAATTTATCAAAAAGAGATGCACTCCGATTTTCTCGTGCAGTTATGAAATACGGGAATGAGAACCAAATCGACTTAATTGCTGCTGACGTTGGTGGTGCAGTTGCCGCAGCTCCACCTGAAGCACAGATTGAACTTTTCAATGCTCTAATTGATGGTTGTTCAGAAGCTGTGGAAATTGGAAATCTGGATATAAAGGGGCCTGTGCTAGATTTTTTTGGTGTCCCTGTGAAAGCAAATGATCTAGTTACCCGTGTCCAAGAGCTTCAACTCCTAGCAAAGCGCATTAGCCGGTATGAAGATCCCCTTGCACAGTTCCGTGTTTTATCGTATCTCAAGCCTTCAAACTGGTCGAAAGGTTGTGGGTGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAATACATTACCATGGATTTGGTAATTGGGAAATGATTAGATTAGATGAAAGGCTTGGCCTCATGAAAAAAATAGCACCTGTAGAACTCCAAAACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGATCGTGCTAATGCCCTTCTGGAACAAGAACTTGTTGTTCTTGGGGTAAAAAATGCAAATAGCAGAGTTGCACGGAAGCCTTCCAAGAAAGAGAAAGAACATACGATGAATATCTCATTGTTGCGTGGACAGGAGAAGAAAAAATTGGGTTCTGTTAATGTCCAAATGAGAAAGGATAGATTTCAGAAACCCCGAAAGGTTGAGCCTATTGTAAAAGAGGAAGGTGAAATGTCTGACAATGAGGAAGTATATGAGCAGTTTAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGATTGCAGACAACCAGTGCTAATCTTCCAAAGGAAAAGGTTCTTTCAAAAATACGCAACTATTTACAACTTCTTGGACGAAGAATTGATCAAATTGTGTTGGAAAATGAAGTGGAACCCTATAAGCAAGATAGAATGACGGTACGACTGTGGAAATATGTATCCACCTTTTCCCATCTTTCAGGGGAGAGGCTCCATCAAATATATTCCAAACTTAAACAGGAACAAGAAGATGATGGTGGGGTTGGTCCCTCTGCCTCATTTAGTAGAAATGGAAACCCATTCCATCGCCACATGGAGAGGCAAAGAGGATTTAAAAATATGGCTAACTACCAAATGTCAGAACCTGATAATAATACAGGAAAATCTGAGGCATGGAAACGAAGAAGAAGAGCTGAAAGTGAGGATCATTTCCAGGGTCAGCCACCACCTCAAAGAACCTCTAGTAATGGAATCCAGATTACCGATCCTAATTCACTTGGGATCCTTGGTGCTGGACCATCTGACAAACGGTTGGTCAGCGAGAAACCTTTTAGGACACAACCAGGTGGGTTTCCTTCAAGTCAAGGTTTTTCCTAA 5217 0.4096 MAFFRNFVNDTVSHGAMEDKGLGQDANNIRRSVGNECTDATSSEKEFDMNLEAQYESDGGPDGACRLQNEGTADDGDGLRESNLQASGSKASTVGRWGSTFWKDCQPSCPQNGFESGKESKSGSDYRNAGGSEDNSVDGETGRLDSEDDDEQKEAGKGRRSHSDVPAEEMLSDEYYEQDGEDQSDSLHYNGIQKSTGGNSWPQQKSTSVKKPVRRKSRISDDDGDGDVDYEEEDEVDEDDPDDADFEPVESSHTLKKDKDWEGEGSDENDDSGESLDVSDDDESFYTKKSKGRQQGKVRKNIKSTRDRKACVASSRQRRLKSSFEDNESTTEDSDSVSDDDFKSTRKRSFNVRKNNSRFSVTTSFSAHNSDVRTSSRAVRKISYVESDGSEEADDGKKKKSQKEEIEEDDGDSIEKVLWHQLKGTAEDAQSNNRSTEPVLMSHLFDSEFDWNEIEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRYRRAISREEIEVYDVSKEMDLEIIRQNSQVERIIADRISKDNSGNVVPEYLVKWQGLSYAEVTWEKDIDIAFAQHSIDEYKAREAAMSVQGKVVDSQRKKSKASLRKLEEQPEWLMGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYNDKKPGKPIKFNALLTTYEVILKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTSLLEFSTKNKLLITGTPLQNSVEELWALLHFLDPTKFKSKDEFVQNYKNLSSFHENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGGSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAQYLSLRGFQFQRLDGSTKSELRQQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQDVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEVKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLGMNIDEILERAEKVEEKTDEDEQGNELLSAFKVANFCNDEDDASFWSRWIKPDAAFQAEEALAPRSARNIKSYAEADPSERSNKRKKKEPEPPERVQKRRKAEHLAPAVPMVDGASVQVRSWSYGNLSKRDALRFSRAVMKYGNENQIDLIAADVGGAVAAAPPEAQIELFNALIDGCSEAVEIGNLDIKGPVLDFFGVPVKANDLVTRVQELQLLAKRISRYEDPLAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEMIRLDERLGLMKKIAPVELQNHETFLPRAPNLRDRANALLEQELVVLGVKNANSRVARKPSKKEKEHTMNISLLRGQEKKKLGSVNVQMRKDRFQKPRKVEPIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVLENEVEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQEDDGGVGPSASFSRNGNPFHRHMERQRGFKNMANYQMSEPDNNTGKSEAWKRRRRAESEDHFQGQPPPQRTSSNGIQITDPNSLGILGAGPSDKRLVSEKPFRTQPGGFPSSQGFS 1738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g02555 1738 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 629 801 IPR014001 -
Mepo7g02555 1738 MobiDBLite consensus disorder prediction 138 169 - -
Mepo7g02555 1738 MobiDBLite consensus disorder prediction 185 208 - -
Mepo7g02555 1738 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 195 1672 - -
Mepo7g02555 1738 MobiDBLite consensus disorder prediction 1208 1239 - -
Mepo7g02555 1738 CDD SF2_C_SNF 923 1058 - -
Mepo7g02555 1738 Pfam Chromo (CHRromatin Organisation MOdifier) domain 526 580 IPR023780 -
Mepo7g02555 1738 Gene3D - 527 579 - -
Mepo7g02555 1738 SMART DUF4208_2 1513 1618 IPR025260 -
Mepo7g02555 1738 Gene3D - 608 847 IPR038718 -
Mepo7g02555 1738 MobiDBLite consensus disorder prediction 1619 1642 - -
Mepo7g02555 1738 SUPERFAMILY Chromo domain-like 504 580 IPR016197 -
Mepo7g02555 1738 MobiDBLite consensus disorder prediction 108 135 - -
Mepo7g02555 1738 MobiDBLite consensus disorder prediction 247 263 - -
Mepo7g02555 1738 Gene3D - 848 1078 IPR027417 -
Mepo7g02555 1738 SMART chromo_7 523 582 IPR000953 -
Mepo7g02555 1738 SMART chromo_7 410 493 IPR000953 -
Mepo7g02555 1738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 838 IPR027417 -
Mepo7g02555 1738 MobiDBLite consensus disorder prediction 305 328 - -
Mepo7g02555 1738 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 937 1088 IPR001650 -
Mepo7g02555 1738 Gene3D - 1344 1449 - -
Mepo7g02555 1738 MobiDBLite consensus disorder prediction 108 345 - -
Mepo7g02555 1738 FunFam Photoperiod-independent early flowering 1 587 861 - -
Mepo7g02555 1738 Pfam Helicase conserved C-terminal domain 934 1047 IPR001650 -
Mepo7g02555 1738 MobiDBLite consensus disorder prediction 384 411 - -
Mepo7g02555 1738 FunFam Chromo domain-containing protein 1 400 525 - -
Mepo7g02555 1738 SMART helicmild6 963 1047 IPR001650 -
Mepo7g02555 1738 Gene3D - 399 524 - -
Mepo7g02555 1738 Pfam Domain of unknown function (DUF4208) 1525 1617 IPR025260 -
Mepo7g02555 1738 ProSiteProfiles Chromo and chromo shadow domain profile. 525 589 IPR000953 -
Mepo7g02555 1738 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 848 1078 - -
Mepo7g02555 1738 Pfam SNF2-related domain 636 905 IPR000330 GO:0005524|GO:0140658
Mepo7g02555 1738 MobiDBLite consensus disorder prediction 1686 1703 - -
Mepo7g02555 1738 MobiDBLite consensus disorder prediction 1656 1738 - -
Mepo7g02555 1738 MobiDBLite consensus disorder prediction 54 95 - -
Mepo7g02555 1738 FunFam protein CHROMATIN REMODELING 5 isoform X2 527 579 - -
Mepo7g02555 1738 SMART ultradead3 613 809 IPR014001 -
Mepo7g02555 1738 MobiDBLite consensus disorder prediction 264 280 - -
Mepo7g02555 1738 SUPERFAMILY Chromo domain-like 409 492 IPR016197 -
Mepo7g02555 1738 ProSiteProfiles Chromo and chromo shadow domain profile. 412 500 IPR000953 -
Mepo7g02555 1738 CDD CD1_tandem 410 490 - -
Mepo7g02555 1738 CDD CD2_tandem 523 579 - -
Mepo7g02555 1738 MobiDBLite consensus disorder prediction 1667 1683 - -
Mepo7g02555 1738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 841 1123 IPR027417 -
Mepo7g02555 1738 MobiDBLite consensus disorder prediction 224 246 - -
Mepo7g02555 1738 MobiDBLite consensus disorder prediction 1201 1239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g02555 Mepo-Chr7 36674016 36698871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g02555 639 1074 RAD5 or RAD16-like Gene Family AT1G02670 25.992 6.20e-36 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo7g02555 SNF2_N 4.9e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g02555 K11367 - gmx:100792398 2937.13