Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g02550 ATGATTACCACAATCCTCAGACGCGCTTCTTCAACTCTCTCTCGCCGCACAATCCCCGCAGCCGCCGAGATTCTCTTCTCTACCACCGCCGCCACTGAGCTCCGTCACCTCACAGCAAGATCCTTCCACTCTAAATCACAAACCTTACTATTCCGTGCTTCTTCTGCTTCTCGCGCTGGTTACGCCGCCGAAGCTTTTCCTTTTGAAGAACCTTCGAAATCGAATAGCGATGAGGGTCTTGAGATCGCGAAGCTTGGGATTTCTCAGGATATTGTCGCTGCTTTGGAGAAGAAAGGAATCACCAAGCTTTTTCCCATTCAGAGGGCTGTGCTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGAACAGGAACTGGAAAAACTCTTGCTTTTGGGATACCCATCATGGATAAGATCATTCAATTTAATGCTAAACATGGGCGAGGAAAGGATCCTCTGGCTTTGGTTTTGGCGCCGACTAGAGAACTTGCGAAGCAGGTTGAGAAGGAATTCTACGAGGCGGCGCCTAATTTGGATACTATCTGTGTTTATGGGGGTACCCCGATCTCTCAACAGATGAGGCAGCTTGATTATGGTGTTGATATAGCAGTTGGTACACCTGGACGAATTATTGATCTTCTTAATAGAGGTGCTCTAAATTTGAAAGAAGTCCAGTTTGTTATTCTTGACGAAGCCGATCAGATGCTTCAAGTTGGGTTCCAGGAAGATGTGGAGAAGATATTGGAGAGATTACCCACTGAGAGACAAACTCTCATGTTCTCTGCAACAATGCCAACTTGGATAAAGCAGTTAACACGCAATTACCTGAAAAATCCTCTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGCTGGCAGATGGAATTTCACTGTACTCGATTCTATCTGATGCGTATGTCAAAGCAGGAATTATTGTTCCTCTAATTAAAGAACATGCAAAAGGAGGAAAGTGCATTGTTTTCACCCAAACAAAACGTGACGCTGATCGAATATCACATGGCATGTCAAAAAGTATTCCATGTGAGGCATTGCATGGAGATATATCACAAGTCCAGAGAGAAAGGACGCTTGCTGGCTTCAGAAATGGCCATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTCGATATACCTAATGTTGATCTTGTGATTCATTATGAACTTCCCAATAATTCAGAGATATTTGTTCACCGATCTGGACGAACTGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTTGTTTATACACAAGACCAATCCAGGACTCTTAGGACTATTGAGCGCGATGTAGGCTGTAAATTTTCAGAGTTACCAAAGATTGCCGTTGATACTGCATCACTGGGCGGATTTAGTGGTGGCGGCAGATTTGGTGGTGGATTTGGTGGTGGCGGATTTGGTGGTGGGGGTGGTGGCCGATCTGGTTCTTTTGGTGGTGGCCGTTCTGGAGGCTACAGTAATTCAGGCGGGTTTTCTGGTTCAAGACAATCTGGAGGGGGGTTTTCTGGTGGATCAAGCTCATATGGTGAAAATAGATATGGCGGATCAAGCTCTGGTCGTTTCGGCTCCTTTGGTTCAGGTGATTCAGGCAGTAGATCTGGTGGATCCTCTGGTGGATTCAGCAAACAAGGTGGTTTTGGTGGATTCGGTGGTGGTTCAGATCGCTCTGGTGGATTTGGTGGTGGTTCAGATCGCTCTGGTGGATTTGGAGATTTTGGGTCGGGTAAATCTGGCGCATTTGGTGATCGTCGTGGCAGGGATTAG 1800 0.4606 MITTILRRASSTLSRRTIPAAAEILFSTTAATELRHLTARSFHSKSQTLLFRASSASRAGYAAEAFPFEEPSKSNSDEGLEIAKLGISQDIVAALEKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGKDPLALVLAPTRELAKQVEKEFYEAAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVILDEADQMLQVGFQEDVEKILERLPTERQTLMFSATMPTWIKQLTRNYLKNPLTIDLVGDSDQKLADGISLYSILSDAYVKAGIIVPLIKEHAKGGKCIVFTQTKRDADRISHGMSKSIPCEALHGDISQVQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAILVYTQDQSRTLRTIERDVGCKFSELPKIAVDTASLGGFSGGGRFGGGFGGGGFGGGGGGRSGSFGGGRSGGYSNSGGFSGSRQSGGGFSGGSSSYGENRYGGSSSGRFGSFGSGDSGSRSGGSSGGFSKQGGFGGFGGGSDRSGGFGGGSDRSGGFGDFGSGKSGAFGDRRGRD 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g02550 599 CDD DEADc 91 286 - -
Mepo7g02550 599 Gene3D - 81 289 IPR027417 -
Mepo7g02550 599 Pfam DEAD/DEAH box helicase 104 273 IPR011545 GO:0003676|GO:0005524
Mepo7g02550 599 MobiDBLite consensus disorder prediction 499 518 - -
Mepo7g02550 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 440 IPR027417 -
Mepo7g02550 599 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 285 IPR014001 -
Mepo7g02550 599 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 64 456 - -
Mepo7g02550 599 Pfam Helicase conserved C-terminal domain 314 419 IPR001650 -
Mepo7g02550 599 MobiDBLite consensus disorder prediction 523 599 - -
Mepo7g02550 599 MobiDBLite consensus disorder prediction 523 552 - -
Mepo7g02550 599 FunFam ATP-dependent RNA helicase RhlE 71 288 - -
Mepo7g02550 599 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 314 458 IPR001650 -
Mepo7g02550 599 SMART ultradead3 99 302 IPR014001 -
Mepo7g02550 599 Gene3D - 308 458 IPR027417 -
Mepo7g02550 599 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 80 108 IPR014014 GO:0003724
Mepo7g02550 599 SMART helicmild6 339 419 IPR001650 -
Mepo7g02550 599 CDD SF2_C_DEAD 311 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g02550 Mepo-Chr7 36625199 36630364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g02550 70 456 Eukaryotic Initiation Factors Gene Family AT3G19760 32.419 7.84e-67 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g02550 - - tpra:123920937 815.068