Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g02535 ATGGCCAAGAAACGAAAGCTTCGATCTTCTGACCCTGAACCCACCAAACAAGCCGAACCCGAACCTCAACAAGAAGAAGTAGCCGAAGAAGAACCAACAACACAAGAAGAAGAAATCACACCGATTGAAGAAGATCAACCTCAAAACGAAGGAGAAGGTGAAGAAGAACAAGAAGAAGAGGTAGCAGAAGAAGAAGAGGGTGATCAACAAGGAGAAGACGAAACCCTAGAAAATCAACAACAAGAGGGTGGCGGTGAAGCTTCAAACAACGCTGCCGTGTCGGAGCAGACTGTGACCGTTGAAGCTAACGGTGGTGGTGAAAACAATAACGAAGAAGAAGAAGATCTTGAATTGGAAGATGAACCTGTTGAGAAGCTTCTAGAACCATTCACGAAGGAGCAATTACACGTGCTTGTGAAGCAAGCGATTGAGAAGTATCCAGATCTGTCTGAGAATGTTCGTCAGCTGGCTGATGTGGACCCCGCTCACCGGAAAATCTTCGTTCATGGTCTTGGTTGGGATGCTACCGCTGAAACGCTAACCACCACGTTTTCGAAGTACGGTGAAATTGAAGATTGCAAGGCTGTGACTGATAAGGCATCTGGAAAATCAAAGGGGTATGCTTTTATTTTGTTTAAGCATCGGACTGGGTGTCGTCGTGCGTTGAAGCAGCCTCAGAAAGTGATTGGGAATAGGACTACGTCGTGTCAATTGGCTTCCGCTGGACCTGTTCCGGCCCCACCACCGAATGCGCCACCGGTGTCTGAGTATACTCAAAGGAAGATTTTTGTGAGTAATGTGAGTTCTGATATTGATCCTCAGAAGCTGCTTGAGTTTTTCAAGCAGTTTGGAGAGGTGGATGATGGCCCATTGGGGTTGGATAAGGCAACTGGGAAGCCAAAGGGTTTTGCGCTGTTTGTTTATAAGACGGTAGAGAGTGCAAAGAAGGCGTTGGAAGAGCCGAATAAGGTGTTCGAGGGGCATACTTTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGTTACAACAAGGGGGGTCATTATCAGCAGCAACAACATCATCATCAGCCTCATCATTCGCATCATCACCATCATGGTGGTGGTGGTGGTCACTACAATCCGAGGAAAGAAAAGAAGTATTCACATGGTGGTGGTGGCCCATCACATGGTGGTCACTTAATGGCTCCTACTGGTCCTGCTGCTGGTGGTTACAATGCTGGTGTGCCGGCTCAGGGATTGAATCCGGCTCTTGGACAGGCTTTGTCAGCTTTGCTTGCTAATCAAGGAGCTGGATTGGGGCTTGGGAATTTGCTTGGAGGTCTTGCTGGTGCGCCAGTGAATCAAGCTGGTCCTCCTGCTGGTGCGTATGGTAATCAAGCTGCTATGGGATATGGCCAGCCTGGGTTGCAGCCACAGTACCAGAATCCTCAGCTGGGTCAGGGCGGAGGTGTTAGACCTCATCCTGGTCCCGGTGGCGCTCCTTACATGGGTCACTAG 1497 0.4896 MAKKRKLRSSDPEPTKQAEPEPQQEEVAEEEPTTQEEEITPIEEDQPQNEGEGEEEQEEEVAEEEEGDQQGEDETLENQQQEGGGEASNNAAVSEQTVTVEANGGGENNNEEEEDLELEDEPVEKLLEPFTKEQLHVLVKQAIEKYPDLSENVRQLADVDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEGHTLYCQKAVDGPKGYNKGGHYQQQQHHHQPHHSHHHHHGGGGGHYNPRKEKKYSHGGGGPSHGGHLMAPTGPAAGGYNAGVPAQGLNPALGQALSALLANQGAGLGLGNLLGGLAGAPVNQAGPPAGAYGNQAAMGYGQPGLQPQYQNPQLGQGGGVRPHPGPGGAPYMGH 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g02535 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 241 IPR000504 GO:0003723
Mepo7g02535 498 MobiDBLite consensus disorder prediction 101 120 - -
Mepo7g02535 498 Gene3D - 248 391 IPR012677 -
Mepo7g02535 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 330 IPR000504 GO:0003723
Mepo7g02535 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 233 IPR000504 GO:0003723
Mepo7g02535 498 SUPERFAMILY RNA-binding domain, RBD 244 369 IPR035979 GO:0003676
Mepo7g02535 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 337 IPR000504 GO:0003723
Mepo7g02535 498 MobiDBLite consensus disorder prediction 341 397 - -
Mepo7g02535 498 MobiDBLite consensus disorder prediction 351 369 - -
Mepo7g02535 498 MobiDBLite consensus disorder prediction 474 498 - -
Mepo7g02535 498 MobiDBLite consensus disorder prediction 1 95 - -
Mepo7g02535 498 SUPERFAMILY RNA-binding domain, RBD 150 245 IPR035979 GO:0003676
Mepo7g02535 498 Gene3D - 156 242 IPR012677 -
Mepo7g02535 498 MobiDBLite consensus disorder prediction 1 23 - -
Mepo7g02535 498 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 31 343 - -
Mepo7g02535 498 MobiDBLite consensus disorder prediction 24 75 - -
Mepo7g02535 498 MobiDBLite consensus disorder prediction 76 95 - -
Mepo7g02535 498 Coils Coil 62 82 - -
Mepo7g02535 498 SMART rrm1_1 261 333 IPR000504 GO:0003723
Mepo7g02535 498 SMART rrm1_1 165 237 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g02535 Mepo-Chr7 36492256 36497000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g02535 256 339 C2H2 Transcription Factor Family AT2G19380 30.952 9.10e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g02535 K12741 - gmx:100792637 487.648