Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g02164 ATGTCTTCACATTGGTGTTATAGGTGCAACAAATTTGTTAGGGTATGGAGGCTAGGGATGCCAATATGTCCCGATTGTGACAGCGGTTTTGTGGAAGATGTCGAACAATCAACACATTCCGCCCATGCTGTTGGTGGCCGCCGAATGAGGTTCCCTATGGCGGCGGCTATGTACATGATAGGCCATCGCAATAACAATTATAATCAAAATGCTTTTCGACGCCACCGTAGAAACAACGTTAATGGTGGAGACATTTCTCCGTTTAACCCGATTATCATGATTCGTGGTGGTGGTGGTGGTGGTTCCTCTGAGGGGACGAGCCGTGAGCGTGAAGAGAATAACGGGTTTGAGCGTTTCTACGAAGATGGCTCCGGTTCTGGTCTTAGACCATTGCCTCCAAGGATGTCAGAGTTTATTCTTGGGTCTGGATTTGAAAGGGTGATGGAACAACTTTCTCATTTTGAAGGTAATCGTAGTGGAAACGAGGGACATAATCAACAACATTTACCGGCATTAAAATCCGCGGTGGAATTGTTACCAACGATTGAAATAAATGAGAGTCATATGAATGTAGAATCACATTGTGCCGTTTGCAAAGAGCCTTTTGAACTTGGAATTTCAGCTAGGGAAATGCCATGCAAACACATATACCATAATGAATGCATACTACCATGGCTTGCGATTCAAAATTCTTGTCCCGTTTGTCGACATGAATTGCCTAGTGAATCACCACAAATTAACAATGAAATTTCCAATTCAAATGAAGAAGAGAATGTTGGGTTGACGATTTGGAGGTTACCGGGTGGAGGGTTTGCCGTGGGAAGGTTTTCGGGTGATGGAGGTGGGGGTGAGAGTAGAATGGAGATTCCTATTGTTTACACAGAAGTGGATGGTGCATTTAACAATGTTGGAGAACCAAGAAGGATTTCATGGTCATTGACATCATCTAGAGGAGGGAGAGGAAGAAGTAGAGGGCGTGCATTTCGTAGAATGTTGAGCAATTTGTTTGGATGTTTGAGAGGTGGAGTTAGGAATCAACATTCTCCTTTTACTACTAGAGAGTTTCCTCAACCTATGACCATGAGAAATAATAGTGCATCTCATACCAATGAGAATCCTTCTCCACGTTCACGTAGGACTTGGTCTATGGATGCAAATGGTGGAATTAGACCATGGTAA 1179 0.4351 MSSHWCYRCNKFVRVWRLGMPICPDCDSGFVEDVEQSTHSAHAVGGRRMRFPMAAAMYMIGHRNNNYNQNAFRRHRRNNVNGGDISPFNPIIMIRGGGGGGSSEGTSREREENNGFERFYEDGSGSGLRPLPPRMSEFILGSGFERVMEQLSHFEGNRSGNEGHNQQHLPALKSAVELLPTIEINESHMNVESHCAVCKEPFELGISAREMPCKHIYHNECILPWLAIQNSCPVCRHELPSESPQINNEISNSNEEENVGLTIWRLPGGGFAVGRFSGDGGGGESRMEIPIVYTEVDGAFNNVGEPRRISWSLTSSRGGRGRSRGRAFRRMLSNLFGCLRGGVRNQHSPFTTREFPQPMTMRNNSASHTNENPSPRSRRTWSMDANGGIRPW 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g02164 392 SMART ring_2 195 235 IPR001841 -
Mepo7g02164 392 SUPERFAMILY RING/U-box 179 242 - -
Mepo7g02164 392 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 117 240 - -
Mepo7g02164 392 Pfam Protein of unknown function (DUF1117) 259 348 IPR010543 -
Mepo7g02164 392 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Mepo7g02164 392 MobiDBLite consensus disorder prediction 347 392 - -
Mepo7g02164 392 Pfam zinc-ribbon 3 33 IPR039525 GO:0061630
Mepo7g02164 392 Pfam Ring finger domain 194 236 IPR001841 -
Mepo7g02164 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 242 IPR013083 -
Mepo7g02164 392 MobiDBLite consensus disorder prediction 347 381 - -
Mepo7g02164 392 FunFam E3 ubiquitin-protein ligase RING1-like 157 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g02164 Mepo-Chr7 32243293 32244471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g02164 130 242 C3H Transcription Factor Family AT5G01980 38.053 5.65e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g02164 K11982 - gmx:100789228 421.009