Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g02153 ATGGGTAAGAAAAACAAAGCGATGAAGGAAAACAGCGACGGCACTGTTAAACAATGTCCCTTAACACTCTTTGTTTCTAATTTACCCTATTCCTTCACTAACTCTCAGCTTGAACAAACTTTCAGTGAAGTTGGACCTGTTAGACGTTGTTTCATGGTTACACAAAAGGGGTCTACACAACATCGTGGTTTCGGTTATGTTCAATTTGCTGTTGAGAATGACGCTAACCAAGCCATTGAGCTGAAGAACGGTTCATTGGTTGGTGACCGGAAAATTATAGTGAAGCACGCAATCCCCCGTCCTCCTCGTGAAAATCGAAGATCAAAACCGGATCAAGAGGGCAATGAAGGCGATCTCACAGAATCAAAAAATGATGATAAAGACAGCGGATTATCTGGAGCAGAGAAGCCTGTTTCAGTTCCAAAAAAACCAAAGGAAGAAGAAGTGAAAGTTTTGGATAAACCAAAAAACTCAAGGAAGCCCGTGGAAATAAAAAAAGCAGCTCTTTGTAATGATGCAGCAGATGAGGGGGGTGGCTCAGAAAAACAGAAGGTTGCTAGAACTGTTATATTTGGTGGTCTCTTGAATTCTGCTATGGCTGAAGATGTTCACCGCCAAGCCAGAGAAATCGGCACTGTGTGTTCTATTAAGCATCCCCTTTCAAGGAATGATCTTCAGCAGCATGGCCTGCTGCAAGAAGGCTGTACTTTCAATGCTTCAGCTGTACTATATACAAGTGTAAAATCAGCTCGTGCTTCTGTTGCAACATTGCATAAAAAAGAGATAGGAGGGGGAACTGTTTGGGCACGCCAACTTGGTGGGGAGGGTGCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCCAAAGAAAATGAAATAAGGGACGCATTTTCATCTGCGGGCACTGTATGGGAGGTATTCATTCCACAGAAGTCCGACACAGGTCTTTCGAAGGGTTTTGCATTTGTAAAATTCACCTGCAAGCAAGATGCTGAAAATGCGATTCGAAAACTCAATGGATCGAAGTTTGGGAGTCGTCTCATAGCTGTTGATTGGGCTGTTCCAAAAAAGATATTTAGTAGTGATACCAATGACGCTCCTGCTTCAGAGGAAGGACAACAAAAGGTGACAGATGAAGATGGTAGTACTACTACTGAGGATGATCTTGAGAATACTGACAAAGAATCTGATCAAGGAGATGATAATGATATTGATAGTGTTGTGGAGGAAGATGTTCCTTCTGACGATGATTTTGACAAGGAAGCAGACATTGCTAGAAAAGTTCTTAACAACTTGATTACATCCTCTGCCAAAGACGAATCTGTAAATAATGATTCCGTGTCTTCTGAAGAAAAGACCAAGCCAAAATCCAAGGGAACTGTTAAGGGTGCAGATAGTAAAACATCTAAAGAGTCCGACAAGGTTTCAGATATTTCTAAGCCTGAAACTTCCAAGGAAACAGAAGATGATTTGCACAGAACAATTTTTATAACCAATCTTCCGTTTGAATTAGATACCGAAGAAGTGAAGCAACGGTTTTCTGCATTTGGTGAAGTAGAATATTTTGCTCCTGTTCTCCACCAAGTGACCAAGCGTCCACGAGGGACTGGTTTTCTTAAGTTTAAAACCGCGGAAGCAGCTGATAATGCAGTTTCAACTGCCAATACTGCTTCTGGGATGGGTATTTTGGTAAAGGGTAGACCATTAAAGGTTTTAAAGGCTCTGGACAAGAAATCGGCTCATGACAAGGAACAGGAGAAAGAAAAAAATGAAGTTCAAGACCACCGCAATCTTTACTTGGCGAAGGAGGGACTTATTCTCGACGGAACTCCAGCTGCCGAAGGTGTTTCAGCCACTGATATGTCAAAACGCAAAAATTTGGAAAGGAAAAAGAAGACGAAGCTTCAATCTCCAAATTTTCATGTTTCAAAAACTAGACTTGTTATCTACAACCTACCAAAGTCAATGACTGAAAAACAACTTAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAACACCTGTAATTCGGCAGATAAAGATTTTGAAAGATGGCAGGAAAGGAAAGGCTACTCAAGAACAGCAGTATTCCCGTGGAGTCGCTTTTCTTGAATTTTCAGAGCATCAACATGCCCTTGTTGCTTTGAGAGTTCTTAACAATAATCCTGAAACCTTTGGTCCTGAACATCGGCCCATTGTGGAGTTTGCTCTTGATAATATCCAAAAACTGAAACTTCGTAACGAAAAGCTACAGTATCAGCAACGGGCTCCTCGCAACGGCAACAACAGAAACGAAAATGATAAACCCGACAATGCAGGAGTTTACGCTCATGGAACTGACAGAAAGCGAAAATCTGAAGAGCATGACAAGCCAGCAAAAGACTTGGTACCAAATTCAAATAGCGAACAAGGTGGTAAAGTGCCAAATGGAAAATCTCCTCAAGGAGGCAAATCCAAAAGACAGAAAGAGAACCCCAAGAGTACAAATTCCGAAGTGATATCATCGAAAGAAAGTCCAAAAGCTTCTTCGGCGAGGAAGCTAAAAAATAACCAAGATGGCCAGAATCATGGTGCTAAATTACATGAAGGTAAAAATAGTTCCATTGACAGTAATAGGAAAATATCAGGAAAGAAAGAAGATGCGGTATTTGGAAAAAGGAAGATGCAAAACCAAGAACAAGCAGGGGAAAAGGTTTCTAGGAAAAGGCCAAAGAAGAATAAAGATTCGGTAGGGAAGGACACAGTAGATAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACATAAGGGTTCTCAAGGAAATGATGGTGAGAAAAAACAATCTAAACAGCTTAGGAAATGGTTCCAATCATGA 2889 0.4105 MGKKNKAMKENSDGTVKQCPLTLFVSNLPYSFTNSQLEQTFSEVGPVRRCFMVTQKGSTQHRGFGYVQFAVENDANQAIELKNGSLVGDRKIIVKHAIPRPPRENRRSKPDQEGNEGDLTESKNDDKDSGLSGAEKPVSVPKKPKEEEVKVLDKPKNSRKPVEIKKAALCNDAADEGGGSEKQKVARTVIFGGLLNSAMAEDVHRQAREIGTVCSIKHPLSRNDLQQHGLLQEGCTFNASAVLYTSVKSARASVATLHKKEIGGGTVWARQLGGEGAKTQKWKLIVRNLPFKAKENEIRDAFSSAGTVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIRKLNGSKFGSRLIAVDWAVPKKIFSSDTNDAPASEEGQQKVTDEDGSTTTEDDLENTDKESDQGDDNDIDSVVEEDVPSDDDFDKEADIARKVLNNLITSSAKDESVNNDSVSSEEKTKPKSKGTVKGADSKTSKESDKVSDISKPETSKETEDDLHRTIFITNLPFELDTEEVKQRFSAFGEVEYFAPVLHQVTKRPRGTGFLKFKTAEAADNAVSTANTASGMGILVKGRPLKVLKALDKKSAHDKEQEKEKNEVQDHRNLYLAKEGLILDGTPAAEGVSATDMSKRKNLERKKKTKLQSPNFHVSKTRLVIYNLPKSMTEKQLKKLCIDAVISRATKQTPVIRQIKILKDGRKGKATQEQQYSRGVAFLEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNIQKLKLRNEKLQYQQRAPRNGNNRNENDKPDNAGVYAHGTDRKRKSEEHDKPAKDLVPNSNSEQGGKVPNGKSPQGGKSKRQKENPKSTNSEVISSKESPKASSARKLKNNQDGQNHGAKLHEGKNSSIDSNRKISGKKEDAVFGKRKMQNQEQAGEKVSRKRPKKNKDSVGKDTVDKLDMLIEQYRSKFSHKGSQGNDGEKKQSKQLRKWFQS 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g02153 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 498 581 IPR000504 GO:0003723
Mepo7g02153 962 MobiDBLite consensus disorder prediction 620 641 - -
Mepo7g02153 962 PANTHER RNA-BINDING MOTIF PROTEIN 14B 19 962 - -
Mepo7g02153 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 353 IPR000504 GO:0003723
Mepo7g02153 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 500 561 IPR000504 GO:0003723
Mepo7g02153 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 92 IPR000504 GO:0003723
Mepo7g02153 962 SUPERFAMILY RNA-binding domain, RBD 497 729 IPR035979 GO:0003676
Mepo7g02153 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 650 741 IPR000504 GO:0003723
Mepo7g02153 962 MobiDBLite consensus disorder prediction 757 962 - -
Mepo7g02153 962 FunFam RNA-binding motif protein 28 649 745 - -
Mepo7g02153 962 MobiDBLite consensus disorder prediction 93 158 - -
Mepo7g02153 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 360 IPR000504 GO:0003723
Mepo7g02153 962 SMART rrm1_1 22 95 IPR000504 GO:0003723
Mepo7g02153 962 SMART rrm1_1 651 743 IPR000504 GO:0003723
Mepo7g02153 962 SMART rrm1_1 283 356 IPR000504 GO:0003723
Mepo7g02153 962 SMART rrm1_1 499 577 IPR000504 GO:0003723
Mepo7g02153 962 MobiDBLite consensus disorder prediction 365 425 - -
Mepo7g02153 962 MobiDBLite consensus disorder prediction 139 158 - -
Mepo7g02153 962 SUPERFAMILY RNA-binding domain, RBD 278 363 IPR035979 GO:0003676
Mepo7g02153 962 MobiDBLite consensus disorder prediction 93 132 - -
Mepo7g02153 962 MobiDBLite consensus disorder prediction 864 935 - -
Mepo7g02153 962 Coils Coil 742 762 - -
Mepo7g02153 962 MobiDBLite consensus disorder prediction 942 956 - -
Mepo7g02153 962 CDD RRM2_RBM28_like 283 359 - -
Mepo7g02153 962 MobiDBLite consensus disorder prediction 443 494 - -
Mepo7g02153 962 CDD RRM1_RBM28_like 22 100 - -
Mepo7g02153 962 Gene3D - 649 745 IPR012677 -
Mepo7g02153 962 CDD RRM3_RBM28_like 498 579 - -
Mepo7g02153 962 Gene3D - 424 595 IPR012677 -
Mepo7g02153 962 SUPERFAMILY RNA-binding domain, RBD 22 268 IPR035979 GO:0003676
Mepo7g02153 962 MobiDBLite consensus disorder prediction 783 804 - -
Mepo7g02153 962 MobiDBLite consensus disorder prediction 836 863 - -
Mepo7g02153 962 Gene3D - 269 402 IPR012677 -
Mepo7g02153 962 Gene3D - 2 135 IPR012677 -
Mepo7g02153 962 MobiDBLite consensus disorder prediction 449 494 - -
Mepo7g02153 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Mepo7g02153 962 MobiDBLite consensus disorder prediction 388 423 - -
Mepo7g02153 962 CDD RRM4_RBM28_like 650 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g02153 Mepo-Chr7 32016099 32024605 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g02153 286 361 Eukaryotic Initiation Factors Gene Family AT3G11400 36.842 4.67e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g02153 K14573 - gmx:100794821 1306.2