Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g01920 ATGCTTTCAGGGGATATACCTCCAAATCAAACCATTTACGTTAAGAATCTCAATGAAAAGATCAAGAAAGATGAGCTAAAGAGATCTCTGTATTGCTTATTCTCTCAATATGGAAGGATTTTGGACATTATTGCTCTAAAGACACCTAAGCTTCGAGGACAGGCATGGGTTTGTTTTAGTGAAGTAACTGCTGCCAGTAATGCAGTCCGACAGATGCAAAACTTCCCATTTTATGAAAAACCTATGAGAATTCAATATGCAAAAACAAAGTCAGATTGTATTGCTAAAGAAGAGGGAAGCTTTGTTCCAAGGGAAAAGAAAAAGAAACAAGAGGAGAAAGCTGAGAAAAAGAGGTATGCTGATGAATCAAAACAATCTGCCGTGCCTAATGGTGGAACACATGGTGCAAGTAATGGTGGCTCAACACAGGCCTCATTCCGTCCAGGGTCCGGTGGCCAAGAGGCTGCTGCTCCCAACAATATTTTGTTCATAGAGAATTTGCCTTATGAAACTACCGGCAGGATGCTCGAAATGCTCTTCGAACAATACCCAGGTTTTAAGGAAGTGCGCTTGATTGAAGCAAAGCCAGGTATTGCTTTTGTAGATTTTGAAGATGAGGGGCAATCATCCATGGCAATGCAGGCTCTTCAAGGCTTCAAAATCACCCCTCAAAATCCCATGATTATAAACTTTGCTAAGAAGTAA 705 0.4085 MLSGDIPPNQTIYVKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKRYADESKQSAVPNGGTHGASNGGSTQASFRPGSGGQEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEGQSSMAMQALQGFKITPQNPMIINFAKK 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g01920 234 Gene3D - 4 117 IPR012677 -
Mepo7g01920 234 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 9 89 - -
Mepo7g01920 234 FunFam U2 small nuclear ribonucleoprotein B'' 152 234 - -
Mepo7g01920 234 CDD RRM1_U1A_like 11 88 - -
Mepo7g01920 234 SUPERFAMILY RNA-binding domain, RBD 8 223 IPR035979 GO:0003676
Mepo7g01920 234 MobiDBLite consensus disorder prediction 99 123 - -
Mepo7g01920 234 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 234 IPR000504 GO:0003723
Mepo7g01920 234 SMART rrm1_1 11 85 IPR000504 GO:0003723
Mepo7g01920 234 SMART rrm1_1 161 230 IPR000504 GO:0003723
Mepo7g01920 234 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Mepo7g01920 234 FunFam U1 small nuclear ribonucleoprotein A 4 109 - -
Mepo7g01920 234 MobiDBLite consensus disorder prediction 99 153 - -
Mepo7g01920 234 Gene3D - 151 234 IPR012677 -
Mepo7g01920 234 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 221 IPR000504 GO:0003723
Mepo7g01920 234 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Mepo7g01920 234 MobiDBLite consensus disorder prediction 126 149 - -
Mepo7g01920 234 CDD RRM2_U1A_like 158 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g01920 Mepo-Chr7 29396785 29403129 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g01920 3 92 Eukaryotic Initiation Factors Gene Family AT1G71770 33.696 1.32e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g01920 K11094 - gmx:100805822 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo7g01920 7 29396785 29403129 Mepo7g01920 7 29396785 29403129 ECH