LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo7g01742	ATGGGTTCTTTATGCGATTTTTGCGGAGACCAGAGGTCTTTGGTGTATTGCCGTTCTGATGCTGCTTCCTTATGTTTGTCGTGTGATCGAAATGTTCATTCTGCTAATGAACTTTCTAAGCGTCATTCAAGAACACTTGTATGCGAGAGGTGTAATATACAACCTGCATATGTGAGGTGCGTTGAAGAGAAAGTTTCACTTTGTCAGAACTGTGATTGGTCAGCTCATGGCACCAATCCATCTTCTTCAACACACAAGAGGCAATCAATCAATTGCTTCTCTGGCTGTCCTTCAGCTTCCGAGCTTTCTTCAATATGGCCCTTTTTCTCAGACATCCCTTCTACGGGTGAAGCATGTGAACAAAAACTCGGTTTGATGAGCATTAATGAGAAAAGTGACAACAGTGCGAGGGTTCCTCCAGAAAGCAAGAATGTGTCTGGTTCAGCTCAAGTGGCCGATCTTCCAAGCAAAAACAAATCTGGTGTCGACACATCTTCAATACCCGAGCCAAGTGCCAAACCCCGTATTTTGGACCAGGCGCCCGGATCTTCCAATGAATGTATGCCAAAGTTACTATGTCCCAGTAGAAAGGCTCCAGCACTATGCGAAGATGACAAGTTGCTTGATGATTTCAACATAGATGAGATGGATTTTGAACTTGAGAACTATACGGAACTTTTTGATTTTGCTCTCAACCACTCTGAAGAGTTTTTTGAAAATGGTGGTATCGATAGCTTATTTGAGAGAAAAGACATGTCTGCTAGTGCTGGTGATTCAAATTGTCAAGGTGCTGTTGCCGCTGAGGGGTCATCAGCAAGGTTTGTTAGTGCTATCCAACCAGAATGCAGCAATGCTGCATCTGCAGATTCAATATTAAGTACTAAAACTGAACCAGTTATTTATTTTATGGAAAGGCAATCAAACCTTTCATTTTCTGGCATTAACAAAGATGCTAGTGCTGGTGACTATCAAGAATGTGGTACTTCTTCAATGCTTCTCACAGGGGAGCCTCCTTGGTGTCCTCCTTGCCCCGAGAATTCTATTCAATCCGCTAATCGTAGCAATGCTGTCATGCGTTATAAGGAAAAGAAAAAGAATCGAAAGTTTGATAAGAAAGTAAGATATGCTTCTCGGAAGGCAAGGGCTGATGTCAGAAAACGTGTGAAAGGCCGGTTCGTCAAAGCTGGGGAAACATATGACTACGACCCTTTGAGTCAAACCAGAAGCTGCTGA	1233	0.429	MGSLCDFCGDQRSLVYCRSDAASLCLSCDRNVHSANELSKRHSRTLVCERCNIQPAYVRCVEEKVSLCQNCDWSAHGTNPSSSTHKRQSINCFSGCPSASELSSIWPFFSDIPSTGEACEQKLGLMSINEKSDNSARVPPESKNVSGSAQVADLPSKNKSGVDTSSIPEPSAKPRILDQAPGSSNECMPKLLCPSRKAPALCEDDKLLDDFNIDEMDFELENYTELFDFALNHSEEFFENGGIDSLFERKDMSASAGDSNCQGAVAAEGSSARFVSAIQPECSNAASADSILSTKTEPVIYFMERQSNLSFSGINKDASAGDYQECGTSSMLLTGEPPWCPPCPENSIQSANRSNAVMRYKEKKKNRKFDKKVRYASRKARADVRKRVKGRFVKAGETYDYDPLSQTRSC	410

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mepo7g01742	410	MobiDBLite	consensus disorder prediction	132	183	-	-
Mepo7g01742	410	MobiDBLite	consensus disorder prediction	132	167	-	-
Mepo7g01742	410	ProSiteProfiles	CCT domain profile.	353	395	IPR010402	GO:0005515
Mepo7g01742	410	ProSiteProfiles	Zinc finger B-box type profile.	43	90	IPR000315	GO:0008270
Mepo7g01742	410	CDD	Bbox1_BBX-like	47	90	-	-
Mepo7g01742	410	SMART	bboxneu5	48	90	IPR000315	GO:0008270
Mepo7g01742	410	SMART	bboxneu5	1	47	IPR000315	GO:0008270
Mepo7g01742	410	CDD	Bbox1_BBX-like	4	47	-	-
Mepo7g01742	410	Pfam	CCT motif	353	395	IPR010402	GO:0005515
Mepo7g01742	410	ProSiteProfiles	Zinc finger B-box type profile.	1	47	IPR000315	GO:0008270

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo7g01742	Mepo-Chr7	27005106	27010610	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo7g01742	1	409	C2C2-CO-like Transcription Factor Family	AT3G07650	52.830	1.92e-138	399

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-CO-like	Mepo7g01742		CCT	4.9e-17	CL0281

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo7g01742	-		-	tpra:123922680	668.692

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