Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g01652 ATGGGGAGAGGAAAGATCCAGATAAGGAGGATTGACAATTCGACGAGCAGGCAAGTTACGTTTTCGAAGCGAAGGAATGGATTGTTGAAGAAGGCGAAGGAACTTGCGATTTTGTGTGATGCTGAGGTTGGAGTTATGATCTTCTCCAGCACTGCAAAACTCTATGATTTTGCTAGCACCAGCATGAAATCAGTAATTGATCGTTACAACAAATCAAAAGAAGAACGTAATCAACTTGGGAGTTCAACCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTGCATAATTTGCAAGAAAGTCACCGGCAAATAATGGGCGAAGAATTATCAGGTTTGACAGTCAAAGAATTACAGGGTTTGGAGAACCAATTGGAAATCAGCCTTCGTGGCGTTCGTATGAAAAAGGAGCAACTTTTCATGGATAAAATACAAGAACTAAACCGAAAGGGAGACATCATACACCAAGAAAATGTCGAACTGTATCGTAAGGTCTATGGAACAAAAGATAAGAATGGAACAAACAGCGTTTTGAGTCTCACAAATGGTGTAGGCATAGGAGACGATCCAAATGTACCTGTGAATCTCCAGCTCAGCCAGCCACAGCAACAACACTACAAGGCCCCTTCAGGAACTACAAAACTAGGACTACAATTGCATTGA 678 0.4145 MGRGKIQIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTAKLYDFASTSMKSVIDRYNKSKEERNQLGSSTSEIKFWQREAAMLRQQLHNLQESHRQIMGEELSGLTVKELQGLENQLEISLRGVRMKKEQLFMDKIQELNRKGDIIHQENVELYRKVYGTKDKNGTNSVLSLTNGVGIGDDPNVPVNLQLSQPQQQHYKAPSGTTKLGLQLH 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g01652 225 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Mepo7g01652 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo7g01652 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo7g01652 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo7g01652 225 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo7g01652 225 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Mepo7g01652 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo7g01652 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo7g01652 225 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Mepo7g01652 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo7g01652 225 Coils Coil 86 106 - -
Mepo7g01652 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mepo7g01652 225 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo7g01652 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 207 - -
Mepo7g01652 225 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g01652 Mepo-Chr7 25888952 25910964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g01652 1 214 MADS-box Gene Family AT4G37940 63.084 4.56e-93 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo7g01652 K-box 6.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g01652 K09264 - gmx:100812413 370.933