Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g01166 ATGGATTTCGACGGGGGTAATAAGCGTGTTTACAATCGTCTTGGTGGGTCCAACGGTGGTGATTCAAAGAATCAGAAAGTGTGTTTTCAATGGCAAGCAGGAAAGTGTAATCGTTATCCATGTCCTTTTCTGCATAGTGAATTGCCTACTTCTAATGGGAATGGTGCTCCTTCTAAACGGGCTTATGCTGATAATTCGAGTTTCTCGGGTAATCGGCGTGGTGGATCGAGTTTTAATTCGTGGGGGCCGGGGAGAGGTGGGGGACGTGGTCGCGGTGGGGGGAGAGGTGGTGTAGGTGGTGGTGGTAGAGGAGTTGTTGTGAATGTTGAAAGAGTTTGTACTTATTGGATTCAAGGGAGTTGTAGTTATGGAGATAGGTGTAAGTTTCTTCACTCTTGGAATGTTGGTGATGGGTTTTCTTTGTTGACTCAGCTTGAAGGACATAAGAAGGTTGTGAGTGGAATTGCTATGCCCTCTGGTTCGGATAAGCTTTATACCGGAAGTACTGATGAGACTGTGAGGGTTTGGGACTGCCAGTCTGGACAGTGTATAGCTGTGATCAATCTTGGCGGTGAAGTAGGTTGTATGATCAGTGAAGGTCCCTGGCTTTTTGTTGGCATACCCAATTTTGTTAAGGCTTGGAACACACAAAATTCAATGGAGATAAGTCTAGATGGCCCTGTGGGACAAGTTTATGCACTTGTTGTGATTAATGATATGCTCTTTGCTGGTACGCAGGATGGAGCTATATTGGTATGGAAATTTAATGTAGCTGCCAACTGTTTTGAGCCTGCTGCATCACTTAAAGGTCATACCCGTGGAGTTGTTTCGTTAGTTGTTGGAGCTAATAGACTTTATTCTGGTTCAATGGACAATACAGTCAGAGTGTGGAACCTTGAAACCTTGCAGTGTTTACAAACACTAACAGAGCACACGTCTGTGGTGATGTCTGTTCTTTGCTGGGATCAGTTCCTTATATCTTGTTCATTAGACAAGACAGTAAAGGTATGGTATGCTACAGAAAGTGGAAATTTGGAAGTGACATATACTCACACTGAAGAACATGGTATAATCACCCTTTGTGGGATGCATGATGCACAAGGCAAGCCCATACTTCTATGCTCTTGCAATGATAACACTGTTCGCCTCTATGATCTGCCATCATTTGCAGAGAGAGGTAAGATATTCAACAAACAAGAGGTGCGAGCAATTCAGACGGGTCCTGGTAGCATATTCTTCACTGGTGATGGAACCGGCCAAGTGAGAGTGTGGAATTGGATACCCGAACCGGCCACATCCAATAACGTCCAATAG 1314 0.4452 MDFDGGNKRVYNRLGGSNGGDSKNQKVCFQWQAGKCNRYPCPFLHSELPTSNGNGAPSKRAYADNSSFSGNRRGGSSFNSWGPGRGGGRGRGGGRGGVGGGGRGVVVNVERVCTYWIQGSCSYGDRCKFLHSWNVGDGFSLLTQLEGHKKVVSGIAMPSGSDKLYTGSTDETVRVWDCQSGQCIAVINLGGEVGCMISEGPWLFVGIPNFVKAWNTQNSMEISLDGPVGQVYALVVINDMLFAGTQDGAILVWKFNVAANCFEPAASLKGHTRGVVSLVVGANRLYSGSMDNTVRVWNLETLQCLQTLTEHTSVVMSVLCWDQFLISCSLDKTVKVWYATESGNLEVTYTHTEEHGIITLCGMHDAQGKPILLCSCNDNTVRLYDLPSFAERGKIFNKQEVRAIQTGPGSIFFTGDGTGQVRVWNWIPEPATSNNVQ 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g01166 437 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Mepo7g01166 437 PRINTS G protein beta WD-40 repeat signature 164 178 IPR020472 -
Mepo7g01166 437 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Mepo7g01166 437 Pfam CCCH-type zinc finger 111 131 IPR041367 -
Mepo7g01166 437 ProSitePatterns Trp-Asp (WD) repeats signature. 285 299 IPR019775 -
Mepo7g01166 437 SUPERFAMILY CCCH zinc finger 110 132 IPR036855 GO:0046872
Mepo7g01166 437 ProSiteProfiles Zinc finger C3H1-type profile. 112 134 IPR000571 GO:0046872
Mepo7g01166 437 MobiDBLite consensus disorder prediction 52 99 - -
Mepo7g01166 437 Gene3D - 120 226 IPR015943 GO:0005515
Mepo7g01166 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 186 IPR001680 GO:0005515
Mepo7g01166 437 FunFam Zinc finger CCCH domain-containing protein 48 133 223 - -
Mepo7g01166 437 PANTHER - 111 432 IPR044715 -
Mepo7g01166 437 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 177 - -
Mepo7g01166 437 SMART c3hfinal6 108 133 IPR000571 GO:0046872
Mepo7g01166 437 SMART c3hfinal6 23 47 IPR000571 GO:0046872
Mepo7g01166 437 Pfam WD domain, G-beta repeat 141 177 IPR001680 GO:0005515
Mepo7g01166 437 Pfam WD domain, G-beta repeat 303 337 IPR001680 GO:0005515
Mepo7g01166 437 Pfam WD domain, G-beta repeat 265 298 IPR001680 GO:0005515
Mepo7g01166 437 Gene3D - 231 437 IPR015943 GO:0005515
Mepo7g01166 437 FunFam Zinc finger CCCH domain-containing protein 48 225 433 - -
Mepo7g01166 437 MobiDBLite consensus disorder prediction 52 78 - -
Mepo7g01166 437 ProSiteProfiles Zinc finger C3H1-type profile. 22 48 IPR000571 GO:0046872
Mepo7g01166 437 SUPERFAMILY WD40 repeat-like 129 427 IPR036322 GO:0005515
Mepo7g01166 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 307 IPR001680 GO:0005515
Mepo7g01166 437 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 301 - -
Mepo7g01166 437 SMART WD40_4 261 298 IPR001680 GO:0005515
Mepo7g01166 437 SMART WD40_4 301 338 IPR001680 GO:0005515
Mepo7g01166 437 SMART WD40_4 342 385 IPR001680 GO:0005515
Mepo7g01166 437 SMART WD40_4 388 425 IPR001680 GO:0005515
Mepo7g01166 437 SMART WD40_4 217 254 IPR001680 GO:0005515
Mepo7g01166 437 SMART WD40_4 138 177 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g01166 Mepo-Chr7 18424037 18429052 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g01166 142 309 Eukaryotic Initiation Factors Gene Family AT2G46290 24.737 2.03e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo7g01166 WD40 0.00054 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g01166 - - mtr:25497231 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo7g01166 7 18424037 18429052 Mepo7g01166 7 18424037 18429052 ECH