Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g01143 ATGGGAAGAGGAAGAGTAGTGTTGGAGAGAATAGAGAATAAGATCAATAGGCAAGTAACATTTTCAAAGAGAAGAAGTGGATTGTTGAAGAAAGCCTTTGAGCTTTGTGTTCTATGTGATGCTGAAGTAGCACTTATCATTTTTTCAAGCCGTGGCAAGCTTTTCCAATACAGTAGCACTACTGATATCAACAAAATCATTGAAAGGTATCGGCAATGTCGTTACAACAAGCCACAAGCTGGAAATTCTTTAGGACATAATGAATCTCAGAATTTATACCAGGACTATTTAAAATTAAAGGCAAAATACGAGTCTCTTGACCGCAAGCAGAGGCATTTTCATGGGGAAGAACTTGAGCAACTTAGCATGAAAGAATTGCAAAGACTCGAGGAACAACTAGACTTAACCCTCACACAAGCTCGTCAGCAACAAATGAAGAAGCTCATGGCACGAGCTGAGGAATTACGTGAAAAGGTGCATCACTTGGAGGAGGTTAACAAAACATTGGATCCCAAGGCAATAGATGAAACCTCAAACCTCGTTGTTGACCAAACAAGTCATATTCAATTGCACAATATACATTAA 585 0.3897 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKLFQYSSTTDINKIIERYRQCRYNKPQAGNSLGHNESQNLYQDYLKLKAKYESLDRKQRHFHGEELEQLSMKELQRLEEQLDLTLTQARQQQMKKLMARAEELREKVHHLEEVNKTLDPKAIDETSNLVVDQTSHIQLHNIH 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g01143 194 Coils Coil 123 165 - -
Mepo7g01143 194 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Mepo7g01143 194 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo7g01143 194 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Mepo7g01143 194 ProSiteProfiles K-box domain profile. 89 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo7g01143 194 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 154 - -
Mepo7g01143 194 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo7g01143 194 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo7g01143 194 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo7g01143 194 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo7g01143 194 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Mepo7g01143 194 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo7g01143 194 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Mepo7g01143 194 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g01143 Mepo-Chr7 17924497 17931033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g01143 1 172 MADS-box Gene Family AT3G02310 52.326 1.76e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo7g01143 K-box 2.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g01143 K09264 - gmx:100793681 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo7g01143 7 17924497 17931033 Mepo7g01143 7 17924497 17931033 ECH
Mepo4g04302 4 52782864 52787903 Mepo7g01143 7 17924497 17931033 PCT