Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g01110 ATGCCTTCACTACCTATCACAAACGACACCGTTTCAATGGAAAGCCCTAAATCAAAATCATCAAAAAAGAAAAAGCTTCTACAAAACGACGTCGTTTCAGAGGTAGACGCCGTTTCAGCGAAGAAAAAGGAGAGTTCGAAGAAAAGGAAGAAAAGTTCAGATGATGATGAAGAAACAAAGAGTGATATAAGCTCCGAAGAAGGTTCTAGAAAAGTGAAGAAGGAGAAAAAGAAGAAGAAAGCGAAGGTTGAAGAAGATGAAGAAATTGTTGAAGAAGAGGTTGTTGTGAAGAAAGATGATCCGAATGCGGTTTCGAATTTTAGGATTTCTGAACCGTTGAGGATGAAATTGAAGGAAAATAAGATTGAAGCTTTGTTTCCGATTCAAGCTATGACTTTCAATACTATTCTTGATGGGTCTGATTTGGTTGGTCGTGCTCGTACTGGACAGGGTAAAACTCTGGCATTTGTGTTACCCATATTAGAGTCATTGACAAATGGTCCAGCTAAATCAGTTAGAAAGACTGGCTATGGGAGAGTCCCAAGTGTTATCGTGCTTCTACCTACAAGGGAATTGGCCAATCAGGTGTATGCTGACTTCGAACTTTATGGTTCGTCCTTGGGATTGTCTGCTTGTGCTGTATACGGTGGAGCTCCATATGGCGCTCAGGAGACCAAACTTAGAAGGGGTGTTGATGTAGTTATTGGAACACCAGGGCGTATTAAGGATCATATCGAGAGGGGGAATATTGACCTGAGCCACCTAAAGTTCCGTGTCCTTGATGAGGCAGATGAGATGTTGAGGATGGGTTTTGTTGATGATGTTGAACTCATTCTAGGTAAGGTACAAGATGTTACCAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAAGCTGGGTTAAGCAAATTTCTACGAAATTTCTGAAAGCAGATAAGAAAACTGCAGATCTTGTTGGAAATGAGAAAATGAAAGCCAGCACCAATGTTAGGCATATTATCCTTCCATGTAATAGTACTGCTAGGGCACAACTTATCCCTGATATTATTCGCTGTTATAGCAGTGGAGGCCGAACAATTATATTTGCGGAGAAAAAGGAGTCTGCTTCTGAGCTTGCTGGATTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAGCAGTCACAACGTGAGATTACATTGAAAGGTTTTAGATCTGGGAAATTCATGACATTGGTGGCCACCAATGTTGCGGCCAGAGGTCTTGACATTAATGATGTTCAGTTGATTATCCAGTGTGAGCCTCCGCGGGATGTAGAAGCATATATACATCGATCTGGGCGGACAGGAAGAGCTGGCAACACTGGAGTTGCTGTGATGCTTTATGATCCCAGAAGGTCGAATATAGCTAAAATAGAAAGAGAAGCAGGTATAAAATTTGAACATGTATCTGCTCCTCAGCCTGATGAAATTGCCAAAGCTATGGGTGGGGATGCTGCTGAAATGATTACCGAAGTGTCTGACAGTGTGATTCCTGCATTTAAATCTGCTGCTGAGGAACTTTTGAACAACTCTGGTTTATCAGCTGTTGAGTTACTCGCAAAAGCTCTTGCAAAAGCTGTTGGTTATACTGAGGTAAAGAACAGATCCCTACTGACTTCGATGGAGGGTTATGTTACATTAATTCTTGAGGGAGGAAAACCTATGTTCACCCCATCCTTTGCATTTGGAACCCTGAGGAGATTCGTACCTGAGGATAAGGTTGACGCTGTGCAAGGTCTTGCTCTTACTGCAGATGGACAGGGTGCTGTTTTTGATGTACCAGCCAAGGACTTGGATATATTTCTCTCAAGTCAAAAGAATGCTGTTAATGTAAGCCTGAAGGTTGCTAAAGAATTGCCTAGTTTGCAACAAAGAGAGGAATCAAGTGGGCGCAGATTTGGCGGTGGTCGTGGATTTTCAGGCGGACGAGGTGGAGGAGGTTATAGGTTTGGCGGAAGAGGTGGTGGTGGTGGAAGAGGTTATGGTGGAGGCAGAGGAGGGGGAAACAGATGGTAA 2040 0.4309 MPSLPITNDTVSMESPKSKSSKKKKLLQNDVVSEVDAVSAKKKESSKKRKKSSDDDEETKSDISSEEGSRKVKKEKKKKKAKVEEDEEIVEEEVVVKKDDPNAVSNFRISEPLRMKLKENKIEALFPIQAMTFNTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKSVRKTGYGRVPSVIVLLPTRELANQVYADFELYGSSLGLSACAVYGGAPYGAQETKLRRGVDVVIGTPGRIKDHIERGNIDLSHLKFRVLDEADEMLRMGFVDDVELILGKVQDVTKVQTLLFSATLPSWVKQISTKFLKADKKTADLVGNEKMKASTNVRHIILPCNSTARAQLIPDIIRCYSSGGRTIIFAEKKESASELAGLLPGARALHGDIQQSQREITLKGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNIAKIEREAGIKFEHVSAPQPDEIAKAMGGDAAEMITEVSDSVIPAFKSAAEELLNNSGLSAVELLAKALAKAVGYTEVKNRSLLTSMEGYVTLILEGGKPMFTPSFAFGTLRRFVPEDKVDAVQGLALTADGQGAVFDVPAKDLDIFLSSQKNAVNVSLKVAKELPSLQQREESSGRRFGGGRGFSGGRGGGGYRFGGRGGGGGRGYGGGRGGGNRW 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g01110 679 Coils Coil 73 93 - -
Mepo7g01110 679 CDD GUCT_RH7_like 543 628 - -
Mepo7g01110 679 MobiDBLite consensus disorder prediction 1 15 - -
Mepo7g01110 679 CDD SF2_C_DEAD 330 456 - -
Mepo7g01110 679 MobiDBLite consensus disorder prediction 1 84 - -
Mepo7g01110 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 460 IPR027417 -
Mepo7g01110 679 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 315 IPR014001 -
Mepo7g01110 679 Pfam GUCT (NUC152) domain 536 631 IPR012562 GO:0003723|GO:0004386|GO:0005524
Mepo7g01110 679 SUPERFAMILY RNA-binding domain, RBD 540 623 IPR035979 GO:0003676
Mepo7g01110 679 Gene3D - 550 626 - -
Mepo7g01110 679 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 259 267 IPR000629 -
Mepo7g01110 679 SMART helicmild6 370 447 IPR001650 -
Mepo7g01110 679 SMART ultradead3 121 333 IPR014001 -
Mepo7g01110 679 MobiDBLite consensus disorder prediction 629 679 - -
Mepo7g01110 679 MobiDBLite consensus disorder prediction 16 72 - -
Mepo7g01110 679 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 43 519 - -
Mepo7g01110 679 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 486 IPR001650 -
Mepo7g01110 679 Pfam Helicase conserved C-terminal domain 348 447 IPR001650 -
Mepo7g01110 679 Gene3D - 17 315 IPR027417 -
Mepo7g01110 679 Gene3D - 325 549 IPR027417 -
Mepo7g01110 679 Pfam DEAD/DEAH box helicase 126 303 IPR011545 GO:0003676|GO:0005524
Mepo7g01110 679 CDD DEADc 113 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g01110 Mepo-Chr7 17163049 17168846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g01110 139 483 Eukaryotic Initiation Factors Gene Family AT1G72730 30.857 1.88e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g01110 K16911 - gmx:100805921 877.085