Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g00880 ATGGTGTTAGGTTGGGGAAGAAGGAAGAACAACAAAAACAACAAAGGTGGAAAACCAAACATGGAGGTAGTGGTTCCAAATCAATTTAGGTGTCCTATTACTCTTGATTTGATGAAAGATCCTGTGACATTGTCAACAGGAATAACCTATGATAGAGAGAGCATTGAAAGATGGTTCAATGAAGGAAACTATACATGTCCTCTCACAAATCAAGTTGTGAGAAACTTTGATATGATTCCAAATCATTCTCTTAGGATAATGATACAAGATTGGTGTGTTGAAAATAGACAAAATGGTGTAGAGAGGATTCCTACTCCAAGAATACCGATTAGTCCGATCGATGTTTCCGAGCTTCTTTTTCGAGTTAAGGAATCGGCAAAAGGTTTGGATCAATATGGTTGTATTGGATTGGTTGAAAAAATGGAGAAATGGAGTAATGAAAGTGAGAGGAACAAAAAATGCATAGTTGAAAATGGAGCAACTAGTGCATTAGCTTTAGCATTTGATGCTTTTGCTAATGATTCTATTGAGAAAAATGTTATTGTTCTTGAAGTGATTTTATCAGCACTTAATTGGATGTTTCCACTTCAATTAGAAGCTCAAAAATCTTTAGGTTCAAAAGCTTCTTTACATTGCATGATTTGGTTTTTGAAGCATCAAGATGTTAAGGGAAAAGAAAAAGCTATTATTGCATTGAAAGAGATTCTTTCTTTTGGTGATGAGAAACATGTAGAAGCACTTATGGAAATTGAAGGTGTTAATGAGCTTTTAATTGAGTTCATTAACAAGAGAATTAGTCCAATAATTACAAAAGCTTCATTGAGGATAATTTGGTATTTAGTTTCATCAAATTCAAATTTCAATGAAAAAATGAAATTTTCATTTGTTGAATTGGGTTTGGTTTCTTCAATTTTACACATTCTTATTGACTCAGAAAAAAGCACTTGTGAGAAAGCTTTAACTATTTTGGATTCTCTATTAAGCTGTGACTTTGCAAGAGAAAAAGCTTATGGAAATGACTTAACAATTCCTCTGTTGGTGAAGAAAATCTTGAGAGTTTCACCTTTGACTACAGAATATTCTGTTTCTTCTATTTGGAAGATGTGCAAATATGGTCACAAAAATTATGAAGGAAAAGCTTTGATTGAAGCACTTCAAGTTGGTGCTTTTCAGAAGCTATTATTGGTATTGCAAGTTGGATGTAGTGATGAGACCAAAGATAAAGCAACTGAACTTCTCAAATTGATGAATCCTTATAGGGCTGAATTGGAAGATTGTGTTGATTCAGATTTCAAGAATCTTAAGAGATCATATTAA 1317 0.3303 MVLGWGRRKNNKNNKGGKPNMEVVVPNQFRCPITLDLMKDPVTLSTGITYDRESIERWFNEGNYTCPLTNQVVRNFDMIPNHSLRIMIQDWCVENRQNGVERIPTPRIPISPIDVSELLFRVKESAKGLDQYGCIGLVEKMEKWSNESERNKKCIVENGATSALALAFDAFANDSIEKNVIVLEVILSALNWMFPLQLEAQKSLGSKASLHCMIWFLKHQDVKGKEKAIIALKEILSFGDEKHVEALMEIEGVNELLIEFINKRISPIITKASLRIIWYLVSSNSNFNEKMKFSFVELGLVSSILHILIDSEKSTCEKALTILDSLLSCDFAREKAYGNDLTIPLLVKKILRVSPLTTEYSVSSIWKMCKYGHKNYEGKALIEALQVGAFQKLLLVLQVGCSDETKDKATELLKLMNPYRAELEDCVDSDFKNLKRSY 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g00880 438 MobiDBLite consensus disorder prediction 1 21 - -
Mepo7g00880 438 SUPERFAMILY ARM repeat 143 415 IPR016024 -
Mepo7g00880 438 SUPERFAMILY RING/U-box 22 100 - -
Mepo7g00880 438 CDD RING-Ubox_PUB 26 78 IPR045210 -
Mepo7g00880 438 Pfam U-box domain 25 96 IPR003613 GO:0004842|GO:0016567
Mepo7g00880 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 103 IPR013083 -
Mepo7g00880 438 Gene3D - 137 430 IPR011989 -
Mepo7g00880 438 PANTHER WDSAM1 PROTEIN 22 417 IPR045185 GO:0061630
Mepo7g00880 438 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
Mepo7g00880 438 FunFam RING-type E3 ubiquitin transferase 25 96 - -
Mepo7g00880 438 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g00880 Mepo-Chr7 13792062 13793574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g00880 5 438 U-box Gene Family AT5G37490 43.665 5.03e-115 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g00880 - - gmx:100794340 661.759