Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g00747 ATGCCTCCGAAGAGGTCATCAAGAGGAAAACAAAAGGTAGAGCTAAAAAAAATTGAGAGTAAGAATGATCTCTTTGTTGCATTTACAACGAGAAAGTCTGGAATTTACAACAAGGCCTCTGAGTTAACAACACTTTCAGGGGCCTCAGTTGATATTCTCATGCTTTCTCCGACAGGAAAACCATATTGTTATGGAAAACCATCTTCTGAATCTATAACAAAAACTAGTTTGAATGATGAAAATCCTTCAATAGAAGAGGAAATGATGAAACCGGAGATTATACAGCTAAATGAAAAAAATGATGATCTTTTGGACAAAAAGCATGCTGCGGAAGCACAACGTAAAAATTTGAAGAAGTTGGAAAGTTCTGGATATTGGTCGATTCAAGAGGAAGATGATAAAAGCTGCCAAAATGATCAAGTGAAAGAAATTGACAAATCCTTAGTTGCTGTCACAAATAAATTGATAGATACAGTCTTGAAAAATGGAGGAGATCTTAACCCTTGTGTAATTTCTACCATCGAGGAACTGAATGGAGTCAAAACAAATCCTGCTTATGTCTTTGAGGACAACAACAAAGATCATGAAATTGGTGCAAAAACACAAGGAGTCAAACTTATTGGTGCAAGCGGAGGATATGAAAGTGGTGTTGATCATGCTTCTTCAGATATATGA 675 0.3615 MPPKRSSRGKQKVELKKIESKNDLFVAFTTRKSGIYNKASELTTLSGASVDILMLSPTGKPYCYGKPSSESITKTSLNDENPSIEEEMMKPEIIQLNEKNDDLLDKKHAAEAQRKNLKKLESSGYWSIQEEDDKSCQNDQVKEIDKSLVAVTNKLIDTVLKNGGDLNPCVISTIEELNGVKTNPAYVFEDNNKDHEIGAKTQGVKLIGASGGYESGVDHASSDI 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g00747 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mepo7g00747 224 Gene3D - 21 90 IPR036879 GO:0003677|GO:0046983
Mepo7g00747 224 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mepo7g00747 224 PANTHER MADS BOX PROTEIN 10 146 - -
Mepo7g00747 224 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Mepo7g00747 224 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mepo7g00747 224 Coils Coil 93 120 - -
Mepo7g00747 224 CDD MADS 9 67 - -
Mepo7g00747 224 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mepo7g00747 224 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mepo7g00747 224 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g00747 Mepo-Chr7 11857070 11858150 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g00747 9 130 Type I MADS-box Gene Family AT2G34440 35.659 1.45e-18 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo7g00747 SRF-TF 3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g00747 - K12412 qsu:112030633 102.449