Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g00643 ATGGGAATCAAAGATCTTCTCAGATTCATGAAAACTTACGTTGAACCAGTTCACATCAAGAACTACGCTGGAAAACGAGTGGGTATTGATGCATATTCATGGCTTCATAAAGGGGCTTATTCGTGTAGTATGGAGCTTTGTCTTGATTCTAATAGTGAAAGGAAATTGCGGTACATTGAATACTTCATGCATAGAGTGAATTTGCTTCGGTACTATAAAGTAACACCAGTTGTTGTTTTTGATGGCGGCAATGTTCCTTGCAAAGCAGCAACTGAGAAAGAGAGGAATAAAAAAAGGAATACTAATCGTGAGTTGGCAATGGCTAAGCTCAAAGAAGGGAATGTTAATGCTGCTTCTGAACTCTTTCAGAGAGCAGTGAATATTACTCCCGTTATGGCTCATAAGCTGATTCAGACTCTGAAATCAGAGAACATTGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCATACTTGTCCAACCTCGAAACCGAAAAAGGTGGCATTGAAGCAGTGATCACTGAAGATAGTGATCTGATTGCATATGGTTGTCCAGCTGTTATTTTTAAGATGGACCGTGACGGGAATGGCGAAAGAATTGAGTTAGAGAAGGTTTTTTCTGCCGAATCTTGTAAACCTTCGTTTCAAAGTTTCGATATGAAACTTTTCACAGGTATGTGTGTTTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGCATTGGTGTTGCTCGAGCGCATGCCCTAGTTTCGAAGTATCGGAATATCGATCGTATCTTGTCTGTTCTTAAGCTTGAGAAAGGTGATCAAATGCCCGTAGATTATGCCAAATCCTTCAAGGATGCACTTGCTGTTTTTGAGCATGCCCGAATATATGATATCAATACCAAAGAGCTCAAGCACATGAAGCCTCTTCCGGAAAGTTTTCTTGAGTCACTTGACAAAGACCTCAATTTTTTGGGGCCAGAAATTCCCTCAACTATAGTCAAAGCAATAGCTGAAGGAAACTTGAATCCATCAACTAAGGAAGCCTTTGATAAATCTGAATGTTCTAGACTTCCTTTACACCCCATTGATCCCCATACCATTGGTCAACTCAGGAAAAGTGAAGTTCCTACACCATTTAAACAGGAGAATTGTTTTTCAATCTTTGGCTCCCAGAATATCAATAAAAATTGTACAGTGACAAGGCTCTCAGATAAAGATAAGTATTCCAATGAAGTAACGGCACTTCAGAAACTAATCATGCCATTGGAAACAAATGAAACAATGAAAAAGCCATTTACATTTGATGAAACTCATTTAAAGGTTCCTAACAACAATCCTTTTAGGATAAGAAAACACGAGGAGGAAATAAGTTTGGTTCAGAAAGAGGAAACAATGGAAGAAATTTCTATTGTAAGCAGTGCTGAATATATAGATATTGATGATTACATGTCACCAAATAACTTTCAAGAAAAAGGGTCAACAAATCTCTCAAAGAAAAGGAAATCTGAGAATGTTTGCTTAGATAAAGCAGAAGTCACTGATGAACAGGTTTCAGGAGTGACTGAAGAGGAAAATTGTGATGCTTTATGCTTGGATATGGAGTCTCAAGAAAGTGTAAAGTCTAAGATTAGGATTAGTGCTGATTTGAAAGGAAGTGGTGGAAGTGAAAAGAAATCCAAGAAGAAAAAGGGGAGTAACATCAGAACTATTTTGAGTTTCTTTTCAAGAGTGTAA 1728 0.3808 MGIKDLLRFMKTYVEPVHIKNYAGKRVGIDAYSWLHKGAYSCSMELCLDSNSERKLRYIEYFMHRVNLLRYYKVTPVVVFDGGNVPCKAATEKERNKKRNTNRELAMAKLKEGNVNAASELFQRAVNITPVMAHKLIQTLKSENIEFVVAPYEADAQLAYLSNLETEKGGIEAVITEDSDLIAYGCPAVIFKMDRDGNGERIELEKVFSAESCKPSFQSFDMKLFTGMCVLAGCDFLPSVPGIGVARAHALVSKYRNIDRILSVLKLEKGDQMPVDYAKSFKDALAVFEHARIYDINTKELKHMKPLPESFLESLDKDLNFLGPEIPSTIVKAIAEGNLNPSTKEAFDKSECSRLPLHPIDPHTIGQLRKSEVPTPFKQENCFSIFGSQNINKNCTVTRLSDKDKYSNEVTALQKLIMPLETNETMKKPFTFDETHLKVPNNNPFRIRKHEEEISLVQKEETMEEISIVSSAEYIDIDDYMSPNNFQEKGSTNLSKKRKSENVCLDKAEVTDEQVSGVTEEENCDALCLDMESQESVKSKIRISADLKGSGGSEKKSKKKKGSNIRTILSFFSRV 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g00643 575 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Mepo7g00643 575 SMART xpgn3 1 102 IPR006085 GO:0004518
Mepo7g00643 575 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 348 IPR036279 -
Mepo7g00643 575 Gene3D - 218 291 - -
Mepo7g00643 575 Pfam XPG N-terminal domain 1 101 IPR006085 GO:0004518
Mepo7g00643 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Mepo7g00643 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Mepo7g00643 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Mepo7g00643 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Mepo7g00643 575 CDD H3TH_FEN1-like 225 295 - -
Mepo7g00643 575 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Mepo7g00643 575 FunFam exonuclease 1 218 291 - -
Mepo7g00643 575 Gene3D - 1 213 - -
Mepo7g00643 575 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 505 IPR006084 -
Mepo7g00643 575 SMART xpgineu 141 213 IPR006086 GO:0004518
Mepo7g00643 575 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Mepo7g00643 575 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Mepo7g00643 575 FunFam Exonuclease 1, putative 1 214 - -
Mepo7g00643 575 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g00643 Mepo-Chr7 10707008 10712082 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g00643 1 321 Core DNA Replication Machinery Family AT5G26680 23.867 1.42e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g00643 K10746 - gmx:100817932 812.372