LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo7g00241	ATGGTTGATGATGATTCTAACGATAACCCATCAATGATTCCATCGCTTTCAACAGATTCACCTAATGATGCAGGGAATGATGTCAAGTTGAGTTCTAAGGACCAGAGAGATGCTCTTCCTGGGGAGCCCCAGTGTATTGTATGTGGCCGATACGGTGAATATATATGTGATGAAACTGACGATGATGTTTGTAGTTTGGAATGTAAACAATCGGTACTATCTCGAATTTCCAAATCGTCATCTAGTGTTGGATGTCTTCCACCACCTAAAAAGCTACCTGCACCCGATGAGTGCTTTTATGTTAGAGATACTGATAACAAATCAGGAAAGCCGTCTTTAGGAGGTGATCAGGTTCAGGCTGAATTGCTTCGAAAGAAACTCGACATTCATGTGAAGGGTGTTGTTTCGGCACCGGTTATGTCGTTCGCTTCATGTAACCTCTCTGACAAACTCCTGCAGAACATAGAGGTAGCTGGTTATGAGATGCCTACGCCTGTCCAAATGCAAGCGATCCCTGCTGCTTTGGTTGGGAAGAACATGCTTGTTTTGGCCGATACAGGTTCAGGAAAGTCTGCTTCGTTTCTTATTCCAATAATTTCTCGTTGTGCAAGTCATCGATTGATGTATGTTTCGGATAAGAAAACGCCTTTAGCTATGGTGTTGACACCTACGAGAGAGCTCAGTATACAGGTTGAAGAGCACGCGAAATTACTCGGGAAAGGGTTGCCGTTTAAAACTGCACTTGTGGTTGGTGGTGATGCCATGGCTAGACAACTTTACCGCATTCAACAAGGAGTTGAATTGATTGTGGGAACACCAGGACGGCTTGTTGATCTTTTATCGAAAAATGAGATTGATTTAGACGACGTGACAACTTTTGTTGTCGATGAAGTGGACTGCATGCTGCAAAGGGGTTTTCGAGATCAGGTATTACAGATATTCACAGCTTTGTCACAACCTCAGGTCTTAATGTATTCCGCAACAACCTCAGATTCTTTAGAGAAGATGGCAAACTATATGGCAAAAGATACAGTGGTTATAACCGTTGGCGAACCTAACAGACCAAACAAGGCCGTTAAGCAGCTAGCTATTTGGGTCGAGTCGAAACAAAAGAAGCAAAAACTATTTGACATTTTAAAAAGCCAGAAACATTTTAAGCCACCTGTTGTAATATACGTCGGCTCAAGACTCGGAGCAGATCTCTTGGCAAACGCAATTACAGTTTCAACTGGAGTTAAAGCTGTTTCAATACACGGCGAGAAATCTATGACCGAAAGGAGAGAAATAATGCAGTCATTTATGGTTGGTGACTTCCCGGTGGTTGTGGCTACCGGAGTTTTGGGCAGAGGGGTTGATCTATTAGGCGTAAGACAAGTTATTGTATTTGACATGCCTAATTCGATTAAGGAGTATGTACATCAAATAGGAAGGGCATCTAGAATGGGAGAGGAAGGTCAAGCCATAGTTTTTGTGAACGATGAGAATAAGAATGTTTTTGCAGAGTTAGTCGATGTATTAAAGTCGGGTGCCGCCGCTATACCTCGGGAGCTTATCAATTCACAGTATACCACAAGGGTTTTCTCTGGAGGAAAGGGTTCAAAGAAAAGAAAACATAGATGA	1620	0.4259	MVDDDSNDNPSMIPSLSTDSPNDAGNDVKLSSKDQRDALPGEPQCIVCGRYGEYICDETDDDVCSLECKQSVLSRISKSSSSVGCLPPPKKLPAPDECFYVRDTDNKSGKPSLGGDQVQAELLRKKLDIHVKGVVSAPVMSFASCNLSDKLLQNIEVAGYEMPTPVQMQAIPAALVGKNMLVLADTGSGKSASFLIPIISRCASHRLMYVSDKKTPLAMVLTPTRELSIQVEEHAKLLGKGLPFKTALVVGGDAMARQLYRIQQGVELIVGTPGRLVDLLSKNEIDLDDVTTFVVDEVDCMLQRGFRDQVLQIFTALSQPQVLMYSATTSDSLEKMANYMAKDTVVITVGEPNRPNKAVKQLAIWVESKQKKQKLFDILKSQKHFKPPVVIYVGSRLGADLLANAITVSTGVKAVSIHGEKSMTERREIMQSFMVGDFPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIVFVNDENKNVFAELVDVLKSGAAAIPRELINSQYTTRVFSGGKGSKKRKHR	539

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo7g00241	539	Gene3D	-	24	82	-	-
	Mepo7g00241	539	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	358	521	IPR001650	-
	Mepo7g00241	539	MobiDBLite	consensus disorder prediction	8	28	-	-
	Mepo7g00241	539	Pfam	Helicase conserved C-terminal domain	371	482	IPR001650	-
	Mepo7g00241	539	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	140	168	IPR014014	GO:0003724
	Mepo7g00241	539	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	129	350	IPR027417	-
	Mepo7g00241	539	SMART	helicmild6	400	482	IPR001650	-
	Mepo7g00241	539	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	136	522	-	-
	Mepo7g00241	539	Pfam	HIT zinc finger	43	69	IPR007529	-
	Mepo7g00241	539	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	171	347	IPR014001	-
	Mepo7g00241	539	MobiDBLite	consensus disorder prediction	1	38	-	-
	Mepo7g00241	539	Gene3D	-	353	538	IPR027417	-
	Mepo7g00241	539	SMART	ultradead3	159	362	IPR014001	-
	Mepo7g00241	539	FunFam	DEAD-box ATP-dependent RNA helicase 41	25	82	-	-
	Mepo7g00241	539	Gene3D	-	112	351	IPR027417	-
	Mepo7g00241	539	CDD	SF2_C_DEAD	359	491	-	-
	Mepo7g00241	539	Pfam	DEAD/DEAH box helicase	164	335	IPR011545	GO:0003676\|GO:0005524
	Mepo7g00241	539	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	287	496	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo7g00241	Mepo-Chr7	4873759	4877168	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo7g00241	141	502	Eukaryotic Initiation Factors Gene Family	AT1G72730	33.425	3.01e-51	179

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo7g00241	K19466		-	gmx:100781473	801.971