Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g00089 ATGTACGGTGGTCCTAACAAATCAAAATCTGTGGTAGAAGGTTCGAATAATGTCAATGACATGAAAAATCTAACTGTCCATATGGCTGATTCAATGGTGGATGCTTCCTATGGGACTATTGATACGCTAAAGGTTACACCGTCAGGTCCAGAGGCAGGTGTAAATGCTGCTGATGCTGCTGGCGCTGATATCAATCGTGCGGATGCTAATGGAAACCGTCCAGTGGATGCTATTGTTGTTCCTCATACGCTCGAAGATGTGAAAACAAGTCTTGAAGAACTGCTTTTATCACCTGGCGCTGATATCGGTTGTTCTCTTCCGCTATCTGTTAATTCATCAAGTCCTCGTTCAGCTGTGCCTTTATCATCTGCTGAAAATGGATCTCCATCCTCTCTTGTGGCTCCAAAGTTTACCGTCTCAGCTGTTACAACTTCATCAGAAAAGAAAGAATATCCAATTGCACTTCCTAGTGTAGAAAGCAGCATGTACGCCACAGATGAATTTCGCATGTATTCGTTTAAGGTCCTTCTTTGTCCTCGTGCATACACTCATGATTGGACCGAGTGTCCTTTTTACCATCCTTATGAGAATGCTAAAAGGAGAGACCTTAGAAAGTTCACCTACAGCTGTGTGCCATGCCCTGATTTTAAAAAAGGGGATTGCAAACGTGCAGATAATTGTGAATTTGCTCATGGACTATTCGAGACCTGGCTACACCCAGATCGGTATCGCACCATTCTCTGCAAAGATGGTACTAGTTGTGACCGAAAGGTGTGCTTTTTTGCACATGTAGCTGAAGAGCTGCGTCCAATATATATGTCCACTGGATCTGCTGTTCCTTTACCCCAATCAGCTGCATCTGCTCCTAATGTCATGGACATGGCTTCTGCAACGAGCCTTTATCGTGGTTTGCTATCAGCTCCTTTTGCACTGCCTTCATCTCCATATACAAATGGAATCTCTCCCTCAAATAATGCTTGGCCAGCTCTTCACTTACCAGGAAGAAATATGTTCCAAGACATTCATGGTCAGCAGCACATGCTAAATGACTTAAGCTGTTTCTCACAGCCCCATCCTGGTGCCATTTCAGTGAGTCGATCTGTTAACTCCTGTCCTAAGTGGGGATCCCATACTGGAAAACCTGATTGGTCCGTTAACGGAAATGACTTTGGTCGAACGCAAAGATATACCTCTTTTGAGCATGGAAACAATGCTCAAGAGCCTGATCTATCTTGGATCCATTCTATTCTCAACTAA 1257 0.4391 MYGGPNKSKSVVEGSNNVNDMKNLTVHMADSMVDASYGTIDTLKVTPSGPEAGVNAADAAGADINRADANGNRPVDAIVVPHTLEDVKTSLEELLLSPGADIGCSLPLSVNSSSPRSAVPLSSAENGSPSSLVAPKFTVSAVTTSSEKKEYPIALPSVESSMYATDEFRMYSFKVLLCPRAYTHDWTECPFYHPYENAKRRDLRKFTYSCVPCPDFKKGDCKRADNCEFAHGLFETWLHPDRYRTILCKDGTSCDRKVCFFAHVAEELRPIYMSTGSAVPLPQSAASAPNVMDMASATSLYRGLLSAPFALPSSPYTNGISPSNNAWPALHLPGRNMFQDIHGQQHMLNDLSCFSQPHPGAISVSRSVNSCPKWGSHTGKPDWSVNGNDFGRTQRYTSFEHGNNAQEPDLSWIHSILN 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g00089 418 SMART c3hfinal6 242 265 IPR000571 GO:0046872
Mepo7g00089 418 SMART c3hfinal6 207 233 IPR000571 GO:0046872
Mepo7g00089 418 ProSiteProfiles Zinc finger C3H1-type profile. 207 234 IPR000571 GO:0046872
Mepo7g00089 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 212 232 IPR000571 GO:0046872
Mepo7g00089 418 Gene3D - 207 270 - -
Mepo7g00089 418 PANTHER UNKEMPT FAMILY MEMBER 30 416 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g00089 Mepo-Chr7 2158455 2159711 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g00089 32 337 C2H2 Transcription Factor Family AT5G12850 47.851 1.25e-86 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo7g00089 zf-CCCH 0.00017 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g00089 - - mtr:25490416 647.891