Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g00073 ATGAACAACAATTGTGAGATATCTAAGAAGAAAATTCCAATGGCGGCTGAGAGAAACAACACACGGAAGAGAAAGAAGGATGAAATCAAGAAAGAGGAAAAGACCTTCTCGAAACATAAACTTGGAATTTTCAACAAAGCAATAGAGCTATCTATTCTATGCGAATCAGAAACTGCACTCATCGTAACATCACCCAACAACAAGTTCTATGCATGTGGCTACCCTAACTATGACGCTGTCATTCAACGTTTTCTGACCGGACATATGGATGAGGATGAGAAAAATAAGCCAGAAGATGATGACATTGTTGAAACCCTAAGGCTTCAATACGAAGTAATGCAAGGAAAACTTAACGAAGAACAGGAGAAATTGGAGAAATTGAAAGCTGTCACTGAGGCACAAATGAGTAATTTTGATTTCCCTGCTGATTGGTGGAATAAATCTATTGATGATATGGATTTAACATCTCTTGAAGATATAACGACTTCTTTGGATAAATTAAAGATTAATTTATCCGTAGCAACCCAAGCGAAGAAGTTCAATTTACATCCAATTCAAGAGAATATGTGTTAA 573 0.363 MNNNCEISKKKIPMAAERNNTRKRKKDEIKKEEKTFSKHKLGIFNKAIELSILCESETALIVTSPNNKFYACGYPNYDAVIQRFLTGHMDEDEKNKPEDDDIVETLRLQYEVMQGKLNEEQEKLEKLKAVTEAQMSNFDFPADWWNKSIDDMDLTSLEDITTSLDKLKINLSVATQAKKFNLHPIQENMC 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g00073 190 MobiDBLite consensus disorder prediction 11 31 - -
Mepo7g00073 190 SMART madsneu2 22 75 IPR002100 GO:0003677|GO:0046983
Mepo7g00073 190 MobiDBLite consensus disorder prediction 1 31 - -
Mepo7g00073 190 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Mepo7g00073 190 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Mepo7g00073 190 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Mepo7g00073 190 SUPERFAMILY SRF-like 24 89 IPR036879 GO:0003677|GO:0046983
Mepo7g00073 190 Coils Coil 15 35 - -
Mepo7g00073 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 34 71 IPR002100 GO:0003677|GO:0046983
Mepo7g00073 190 Coils Coil 103 137 - -
Mepo7g00073 190 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Mepo7g00073 190 Gene3D - 27 110 IPR036879 GO:0003677|GO:0046983
Mepo7g00073 190 PANTHER MADS BOX PROTEIN 24 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g00073 Mepo-Chr7 1881110 1881682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g00073 35 180 Type I MADS-box Gene Family AT5G60440 31.579 8.55e-18 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo7g00073 SRF-TF 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g00073 - - mtr:11443695 189.889