Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g00072 ATGGCTTCCGAGGGAAACAAGACTAACGCTGCAACAAAACCCAACACACTGAAGAGAAAGATTGGTAAATTAAGGAAGTGGAAAAACTCAACAAGTTTGACAAGAAAACGCAAATCCGGACTTTTCCACAGAGTAACAGAACTCTCCATTCTTTGCAAAGCAAGAACTGCACTCATCATCATATCACCTGACAAGAAGCTCTATGCATGTGGTTACCCTACTGTCGACGCCGTCATTCAACAATTTCTGGACGGAAAGAAGAAGGAAGACAAGGAGATTGTTGAAACCCTTGAATATGAGGCAATTCAAGGAGATGAAAAGAATTTTCCGATTATCACTGATGAGGCACGAAAGAGTAGTTTTGATTTTCCTTCTTGGTGGAATAATTCTTCTGATGGTATGAGTTTAAAATCACTTGAAGAATTTAAGACTTCTATGGTAAATTTGAGGTTCAATATAGATGCAGTCATAGAAGAAAAAAAGAAAATGTTCAAATCCAATTAA 504 0.375 MASEGNKTNAATKPNTLKRKIGKLRKWKNSTSLTRKRKSGLFHRVTELSILCKARTALIIISPDKKLYACGYPTVDAVIQQFLDGKKKEDKEIVETLEYEAIQGDEKNFPIITDEARKSSFDFPSWWNNSSDGMSLKSLEEFKTSMVNLRFNIDAVIEEKKKMFKSN 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g00072 167 SMART madsneu2 16 73 IPR002100 GO:0003677|GO:0046983
Mepo7g00072 167 SUPERFAMILY SRF-like 18 84 IPR036879 GO:0003677|GO:0046983
Mepo7g00072 167 ProSiteProfiles MADS-box domain profile. 18 74 IPR002100 GO:0003677|GO:0046983
Mepo7g00072 167 Gene3D - 35 103 IPR036879 GO:0003677|GO:0046983
Mepo7g00072 167 PANTHER MADS BOX PROTEIN 23 153 - -
Mepo7g00072 167 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 35 69 IPR002100 GO:0003677|GO:0046983
Mepo7g00072 167 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Mepo7g00072 167 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g00072 Mepo-Chr7 1877715 1878218 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g00072 23 167 Type I MADS-box Gene Family AT5G60440 27.108 8.63e-16 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo7g00072 SRF-TF 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g00072 - - cam:101507050 144.821