Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04421 ATGCAATTAGCTTCAAACACTGACTACCAAGATTCTTCTTCTTCTTCTTCTTCAGAAACCCAACCCATTTTGAATCACCTCTGTGAAATTATTCCTATTCCTGCCACCAATGACGACGACAATGAGTCTTCTCGTCTTGTTGTAGATGCTGATCACCCACAATGCCGGATATGCCTTGATCTTGGAGGAGAAGACTTAATTGCCCCCTGCCATTGCAAAGGTACCCAAAAGTATGTCCACAGATCATGTCTCGATAATTGGAGGTCTACCAAGGAGGGCTTTGCTTTTTCTCACTGTACTGAATGCAGAGCTGTCTTCATAATACGACCAAATGTCCCTAAAGATCGATGGTGGTTGAGATTGAAATTTCAGTTTCTTGTTGCCAGAGATCATGCATTCATTTTCATCATTGTTCAACTCGTTGTTGCTTTCTTGGGAGTGCTTATTTATAAATTCTATGGAGATGAACTTAGAGAAATGTTTGGTTATGAAGAACATCCATACGGATTTTACACAATGGCTGTTCTCGCCATTATTTTGGTGGGTTTGCTCTATGGCTTCTTTATAGCAATAATATGTGGGCAAAGAATCAATGAACGCCACTACCATGTTCTTGCCAAACAAGACTTGACAAAGGAGTATGTGGTAGAAGATCGAGAACATGCAAAGGATGTGCCTGAACTCGACCCCAGCCATGTGACAGAACTAAGGATGTTGGGCCTTTACTAG 729 0.4143 MQLASNTDYQDSSSSSSSETQPILNHLCEIIPIPATNDDDNESSRLVVDADHPQCRICLDLGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFIIRPNVPKDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLIYKFYGDELREMFGYEEHPYGFYTMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQDLTKEYVVEDREHAKDVPELDPSHVTELRMLGLY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04421 242 SUPERFAMILY RING/U-box 50 106 - -
Mepo6g04421 242 SMART ringv_2 54 103 IPR011016 GO:0008270
Mepo6g04421 242 MobiDBLite consensus disorder prediction 1 20 - -
Mepo6g04421 242 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 175 242 - -
Mepo6g04421 242 CDD RING_CH-C4HC3_MARCH 55 103 - -
Mepo6g04421 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 108 IPR013083 -
Mepo6g04421 242 Pfam RING-variant domain 55 102 IPR011016 GO:0008270
Mepo6g04421 242 ProSiteProfiles Zinc finger RING-CH-type profile. 47 109 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04421 Mepo-Chr6 56316040 56317336 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04421 9 201 C3H Transcription Factor Family AT1G50440 61.658 8.10e-87 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04421 - - gmx:100789593 420.239