Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04410 ATGAAGCTCACAGTGAAGACTTTGAAAGGAAGCCATTTCGAAATCAGAGTTCATCCTTCTGATTCGATAATGGCTGTAAAAAAGAATATTGAAGATATTCAAGGAAAAGATAATTACCCATGCGGACAACAATTGCTGATTCACAATGGTAAAGTTCTCAAAGATGAAACTACTTTAGCTGACAATAAAGTCTCTGAAGATGGCTTTCTTGTTGTCATGCTTAGTAAGAGTAAAGCCTTGGGATCTGCTGGAACTTCATCTACTCAGACCGCTAGCAATCCACCTATAACTGTGCCAACACCAGATTCCACACCTGTAGTACAAACTCAATCTGCAAACAACGCATCTCCTGCAGCTGTGGCACCTACAAATGTTACTACAGATACTTATGGACAGGCTGCTTCAAATTTAGTTGCTGGAAGTAATCTTGAGCAGACTATTCAACAACTTATGGACATGGGTGGTGGCAGCTGGGACAGGGATACCGTCAATCGTGCTCTTCGTGCAGCTTTCAATAATCCAGAGCGTGCTGTAGATTACTTGTATTCTGGAATTCCTGAAGCAGCAGAAGTTGCTGTACCGGCTGCTCAATACCCAAGTAATCCAACTGAAACAGGTGGGGTCACTACCGGAGTTGTTCCTGGGGTCCCTAACTCGTCTCCCTTGAATATGTTTCCACAGGAGACAATTTCTGGTGCTGGAGCTGGAGCTGGAGCTGGAGCTGGTTCGCTTGACTTCTTGAGGAACAATCCCCAGTTTCAAGCATTGCGGACAATGGTGCAATCCAATCCACAAATTCTCCAGCCTGTACTTCAGGAGCTTGGAAAGCAAAATCCAGGTCTCTTGAGACTAATTGACGAGCATCATTCTGAGTTTCTTCAGTTGATAAATGAACCCATGGATGGTACTGAAGGAGATAATTTTGATCAGGCGGAGCAAGACATGCCTCATGCTGTCAATGTGACGCCAGCTGAGCAGGAGGCAATTGGAAGGCTAGAGGCTATGGGATTTGATAGAGCCTCTGTCATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTGGAAAATGCTGGGGATTTTGAGGATTAA 1110 0.4459 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKALGSAGTSSTQTASNPPITVPTPDSTPVVQTQSANNASPAAVAPTNVTTDTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEVAVPAAQYPSNPTETGGVTTGVVPGVPNSSPLNMFPQETISGAGAGAGAGAGSLDFLRNNPQFQALRTMVQSNPQILQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAVNVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04410 369 SMART CBM 242 285 IPR006636 -
Mepo6g04410 369 SUPERFAMILY UBA-like 306 366 IPR009060 GO:0005515
Mepo6g04410 369 CDD UBA1_Rad23_plant 137 185 - -
Mepo6g04410 369 Gene3D - 233 300 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mepo6g04410 369 MobiDBLite consensus disorder prediction 82 109 - -
Mepo6g04410 369 SUPERFAMILY UBA-like 140 191 IPR009060 GO:0005515
Mepo6g04410 369 SMART ubq_7 1 75 IPR000626 GO:0005515
Mepo6g04410 369 FunFam UV excision repair protein RAD23 homolog 316 364 - -
Mepo6g04410 369 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 141 184 IPR015940 -
Mepo6g04410 369 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 358 - -
Mepo6g04410 369 FunFam UV excision repair protein RAD23 homolog 136 186 - -
Mepo6g04410 369 NCBIfam UV excision repair protein Rad23 1 368 IPR004806 GO:0006289
Mepo6g04410 369 CDD Ubl_Rad23 1 74 - -
Mepo6g04410 369 PRINTS DNA repair protein Rad23 signature 336 350 IPR004806 GO:0006289
Mepo6g04410 369 PRINTS DNA repair protein Rad23 signature 319 335 IPR004806 GO:0006289
Mepo6g04410 369 PRINTS DNA repair protein Rad23 signature 351 366 IPR004806 GO:0006289
Mepo6g04410 369 PRINTS DNA repair protein Rad23 signature 270 292 IPR004806 GO:0006289
Mepo6g04410 369 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 323 363 IPR015940 -
Mepo6g04410 369 Gene3D - 316 364 - -
Mepo6g04410 369 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Mepo6g04410 369 SUPERFAMILY Ubiquitin-like 1 84 IPR029071 -
Mepo6g04410 369 Pfam UBA/TS-N domain 143 181 IPR015940 -
Mepo6g04410 369 Pfam UBA/TS-N domain 325 360 IPR015940 -
Mepo6g04410 369 FunFam UV excision repair protein RAD23 B 234 300 - -
Mepo6g04410 369 SMART uba_6 143 183 IPR015940 -
Mepo6g04410 369 SMART uba_6 325 362 IPR015940 -
Mepo6g04410 369 FunFam UV excision repair protein RAD23 1 80 - -
Mepo6g04410 369 Gene3D - 1 80 - -
Mepo6g04410 369 Gene3D - 136 186 - -
Mepo6g04410 369 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Mepo6g04410 369 Pfam XPC-binding domain 244 299 IPR015360 GO:0003684|GO:0006289|GO:0043161
Mepo6g04410 369 SUPERFAMILY XPC-binding domain 241 306 IPR036353 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04410 Mepo-Chr6 56201982 56206632 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04410 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 1.74e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04410 K10839 - gmx:100804038 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g04410 6 56201982 56206632 Mepo6g04410 6 56201982 56206632 ECH