Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04409 ATGAAGAAAAACCAAAACCAAAACCAAAACCAAACCCTTGGTCGTATGTTTTCAAATCCCCTAAGCGAGATTGACACCAACGTTCAGCTCACTCTGAGGCATAGTCGTAGCTGCAGCAACACTTGTCACTATGTAGCAGACAACAAGGAAAATCCCAATCTCAACAATGTTGTTTCAACAAACAGGATTCTCAAGCCTTCCTCATTACAGTTTTGCATGCAAATCAACGATCCATCTTCCGATTCTTCCCACTTTTCCAGCTCTTTGAAAATTTGGGACCACTCCGACTCTGAAGCAGCTGCTCCTGCTTCCTCCTGGTCTACTTTACCCAACAAGTCTTTGATATGTAGACCATTGCCTATAGATATTGGAAGATGTACTTGTGTTATTGTTAAGGAACCAACACCTCAGGGTCCCAATTTATTCTCTCTTTATACCTATGAAGGTCAGGGACGACAGAATAGGAAACTGGCTGTTGCCTACCACAAGCGCCGGAGTGGGAGGTCTCACTTCACAGTAGCTCAGAATCTCAAAGGACTACTCTCCAATTCTGATGATGATACTTTTCTCGGTACAGTAACCGCTAACCTCACCGGCTCTAAATACCACATTTGGGATCAGGGATATTATCGCCATAAGCCCCGTAGTAAACAACCAAAACCTCCTCTTCCTCTTGCTGTTGTTGAGTATGTACCTACAATAGCAACATGTACAGGAACTCACAGAAGCATCAAAGCTTATATACCCAACCATCAATCTATATCTTTCAAGAACACCAACCAGGTACAACATATCAAGGGACTACCAGTGAATTGGGAGGGAAAAATGGACAAAGTGCATCAACTATTCTCAAGGGATCCACTCTATAACAAGAGTACAAAGCAATTTCAGCTTGACTATAGAGATAAAGGAAGGCCAGGACTTGGAATCCAGAGATCCGTGAAAAACTTTCAGCTCACTTTAGAGGAAAATGGTAAGCAGACAATCCTGCAGCTAGGGAGGGTAGGAAAATCTAATTTTGTTATGGACTACAGATATCCTTTGACTGGTTACCAGGCGTTTTGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGTTGCATAGTGTAG 1110 0.4252 MKKNQNQNQNQTLGRMFSNPLSEIDTNVQLTLRHSRSCSNTCHYVADNKENPNLNNVVSTNRILKPSSLQFCMQINDPSSDSSHFSSSLKIWDHSDSEAAAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEPTPQGPNLFSLYTYEGQGRQNRKLAVAYHKRRSGRSHFTVAQNLKGLLSNSDDDTFLGTVTANLTGSKYHIWDQGYYRHKPRSKQPKPPLPLAVVEYVPTIATCTGTHRSIKAYIPNHQSISFKNTNQVQHIKGLPVNWEGKMDKVHQLFSRDPLYNKSTKQFQLDYRDKGRPGLGIQRSVKNFQLTLEENGKQTILQLGRVGKSNFVMDYRYPLTGYQAFCICLASIDAKLCCIV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04409 369 SUPERFAMILY Tubby C-terminal domain-like 103 367 IPR025659 -
Mepo6g04409 369 PRINTS Tubby superfamily signature 325 344 IPR000007 -
Mepo6g04409 369 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Mepo6g04409 369 PRINTS Tubby superfamily signature 346 368 IPR000007 -
Mepo6g04409 369 PRINTS Tubby superfamily signature 305 321 IPR000007 -
Mepo6g04409 369 PANTHER TUBBY-RELATED 64 366 - -
Mepo6g04409 369 Gene3D Tubby Protein; Chain A 111 362 IPR025659 -
Mepo6g04409 369 Pfam Tub family 117 362 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04409 Mepo-Chr6 56198267 56199894 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04409 64 262 TUB Transcription Factor Family AT1G16070 54.673 1.70e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mepo6g04409 Tub 2.1e-39 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g04409 6 56198267 56199894 Mepo6g04409 6 56198267 56199894 ECH