Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04408 ATGTGTGGTGGTGCAATTATCTCCGACTTTATCTCAACTGCGGCGGTGGTGGGTGGTTCCCGCCGTGTCACCGCCGACATGTTGTGGCCCAATTTGAGGAAACCCAGTTCCAAAAAACCGTTTTTCCTTGACAATGATTTCGAAGCTGAGTTCAGAGAGTTTAAGGATGATGCTGATTTCGATGATGATGAAGGGTTGTTGGTCGGTGCCAATGGTTTTACCTTTGGTTCAACTAACAACAAATCTTCCAACTCCTTTGTTCGTGGATCAAGTGCTGCAAAAGTTGTTGCATCGAAATCAAACGAGCAAGGTGAAAAGGAATTGAAGAGAAAGAGGAAGAATCAGTATAGGGGTATCCGCCAACGTCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCAAGGAAAGGAGTTCGTGTTTGGCTTGGAACTTTCAACACTGCTGAAGAAGCTGCAAGAGCCTACGATGCTGAAGCTAGGAGAATCCGTGGCAAGAAAGCCAAGGTGAATTTTCCCGAAGAGGCTCCAAATGCTTCCTCAAAACGTCTCAAGACAAATCCTGAGACACTGCTGTTGGACAAAAATCTGAACTCTTTCAAGTGTGAAAATATGGAGAACTACTATTCCCCTGTGGATCGGGTGGAACAGAGACCATTGGTTAACGACCAGTGTGCTAATGTCGGACCCTTTGCTGGAAACGGTGTTCAGCTTGCATCTGCTGATGTTACTGCATATTTCAGTTCGGAGTATTCAAGCAATTCGTTTGATTATCCTGATCTATGTTGGGGTGAACAAGGCCCGAAAACACCTGAGATTTCATCCGTGTTTTCTGCTCCTATAGAAGGTGAATCTCAGAAGAATCTGCTGTCTGACACCTCTCAGGATATGCTACCTATGCAAAATGATTCAGCAAAGACACACTCTGAGGAGCTTGCAGATATCGAATCCGAGTTGAAGTTCTTTGAGAACTCGTTTGATGATAACTGGAGTGATGCTTCATTGGCAGCTTTGCTTGGTGAAGATACAACTCAGGATTGTGGAAACACAATGGACCTTTGGAGCTTTGATGACCTGTCTTCCATCGCAGGCGGTGTTTTCTGA 1101 0.455 MCGGAIISDFISTAAVVGGSRRVTADMLWPNLRKPSSKKPFFLDNDFEAEFREFKDDADFDDDEGLLVGANGFTFGSTNNKSSNSFVRGSSAAKVVASKSNEQGEKELKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEAPNASSKRLKTNPETLLLDKNLNSFKCENMENYYSPVDRVEQRPLVNDQCANVGPFAGNGVQLASADVTAYFSSEYSSNSFDYPDLCWGEQGPKTPEISSVFSAPIEGESQKNLLSDTSQDMLPMQNDSAKTHSEELADIESELKFFENSFDDNWSDASLAALLGEDTTQDCGNTMDLWSFDDLSSIAGGVF 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04408 366 Coils Coil 304 324 - -
Mepo6g04408 366 PANTHER DNA-BINDING DOMAIN 90 279 IPR044808 GO:0003700|GO:0009873
Mepo6g04408 366 SUPERFAMILY DNA-binding domain 115 173 IPR016177 GO:0003677
Mepo6g04408 366 Gene3D AP2/ERF domain 114 173 IPR036955 GO:0003700|GO:0006355
Mepo6g04408 366 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Mepo6g04408 366 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Mepo6g04408 366 FunFam Ethylene-responsive transcription factor 2 114 173 - -
Mepo6g04408 366 ProSiteProfiles AP2/ERF domain profile. 115 172 IPR001471 GO:0003700|GO:0006355
Mepo6g04408 366 CDD AP2 115 173 IPR001471 GO:0003700|GO:0006355
Mepo6g04408 366 SMART rav1_2 115 178 IPR001471 GO:0003700|GO:0006355
Mepo6g04408 366 Pfam AP2 domain 115 164 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04408 Mepo-Chr6 56193418 56196155 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04408 1 366 AP2-EREBP Transcription Factor Family AT3G14230 41.397 1.86e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo6g04408 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04408 K09286 - gmx:100818646 394.43