LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo6g04386	ATGGAACAACATAATCAAAATAGGAAAAGAAACATTCTGTTCAACAAATACGAGATAGGTAAAACCCTAGGGCAAGGAAATTTCGCAAAAGTGTATCATGGAAGAAACATAGCGACAAACGAAAACGTGGCTATCAAAGTGATCAAAAAAGAGAAGCTGAAGAAAGAGAGGTTGATGAAGCAAATCAAACGTGAAGTTTCCGTGATGCGTCTCGTTCGTCATCCACATATTGTTGAGCTTAAGGAAGTCATGGCTAACAAGGCTAAAGTGTTCATGGTTGTTGAATACGTCAAAGGTGGTGAACTTTTCGCCAAAGTTGCCAAAGGTAAAATGGAAGAAAATATTGCTAGAAAGTATTTTCAACAATTGATCAGTGCTGTTGATTTCTGTCATAGTCGGGGAGTTACACACCGTGATCTTAAACCTGAGAATCTTCTTTTGGATGAAAATGAAGATCTTAAGGTCTCTGATTTTGGTTTATCAGCATTACCGGATCAACGTAGATCCGATGGAATGCTTCTCACACCTTGTGGTACTCCTGCATATGTTGCACCTGAAGTTTTGAAGAAGATTGGTTATGATGGTTCAAAAGCTGATATTTGGTCTTGTGGTGTTATTCTTTTTGCTTTGCTTTGTGGTTATTTGCCCTTTCAAGGTGAGAATGTTATGAGGATTTATAGCAAATCTTTTAAAGCTGATTATGTTTTACCTGAATGGATTTCACCTGGGGCCAAGAAGTTGATTTCTAATTTGCTTGTTGTTGATCCTGAAAAGAGGTTTTCAATTCCTGATATTATGAAAGATCCTTGGTTTCAAATTGGTTTTATGAGACCTATTGCTTTTTCAATGAAAGAATCTGCTGTGGATGATAACATTGATTTCAGTGGAGATGATGAAGGGAGTGGCAATAGCAATGGTGATGGAAATTCTTTTGAGGTTGTGGGTGGAACTGGAACTGGAACTGGAACTGGAACAAAACATGCTCGTAGACCATCCTACAATGCGTTTGAGATAATTTCATCGTTATCGCATGGATTTGATCTAAGGAATTTGTTTGAGACGAGGAAGAGATCGCCTTCAATGTTTATATCGAAGCTGTCTGCTTCTGCGGTGGTGGGGAAGCTGGAGAATGTGGCGAAGAAGCTGAATTTGAGGGTAACTGGAAAGAAGGATTTCATGGTGAGAATGCAAGGGACTACAGAGGGGAGGAAGGGGAAATTGGGTATGACGGTGGAGGTGTTTGAGGTCGCACCGGAGGTGGCAGTGGTGGAGTTTTCTAAGTCAGCTGGAGACACACTTGAGTATGTGAAGTTCTGTGAAGATGAAGTTAGACCTTCTCTCAAAGACATTGTGTGGAGCTGGCAGGGTGATACTCAATACTAA	1383	0.4027	MEQHNQNRKRNILFNKYEIGKTLGQGNFAKVYHGRNIATNENVAIKVIKKEKLKKERLMKQIKREVSVMRLVRHPHIVELKEVMANKAKVFMVVEYVKGGELFAKVAKGKMEENIARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPDQRRSDGMLLTPCGTPAYVAPEVLKKIGYDGSKADIWSCGVILFALLCGYLPFQGENVMRIYSKSFKADYVLPEWISPGAKKLISNLLVVDPEKRFSIPDIMKDPWFQIGFMRPIAFSMKESAVDDNIDFSGDDEGSGNSNGDGNSFEVVGGTGTGTGTGTKHARRPSYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKLSASAVVGKLENVAKKLNLRVTGKKDFMVRMQGTTEGRKGKLGMTVEVFEVAPEVAVVEFSKSAGDTLEYVKFCEDEVRPSLKDIVWSWQGDTQY	460

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo6g04386	460	Coils	Coil	45	65	-	-
	Mepo6g04386	460	Pfam	NAF domain	332	387	IPR004041	GO:0007165
	Mepo6g04386	460	FunFam	Non-specific serine/threonine protein kinase	329	452	-	-
	Mepo6g04386	460	SMART	serkin_6	17	271	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo6g04386	460	FunFam	Non-specific serine/threonine protein kinase	8	96	-	-
	Mepo6g04386	460	ProSiteProfiles	Protein kinase domain profile.	17	271	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo6g04386	460	CDD	CIPK_C	334	448	-	-
	Mepo6g04386	460	MobiDBLite	consensus disorder prediction	297	328	-	-
	Mepo6g04386	460	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	135	147	IPR008271	GO:0004672\|GO:0006468
	Mepo6g04386	460	Gene3D	Kinase associated domain 1, KA1	329	453	-	-
	Mepo6g04386	460	ProSitePatterns	Protein kinases ATP-binding region signature.	23	50	IPR017441	GO:0005524
	Mepo6g04386	460	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	5	448	-	-
	Mepo6g04386	460	MobiDBLite	consensus disorder prediction	292	328	-	-
	Mepo6g04386	460	ProSiteProfiles	NAF domain profile.	328	353	IPR018451	GO:0007165
	Mepo6g04386	460	FunFam	Non-specific serine/threonine protein kinase	10	310	-	-
	Mepo6g04386	460	Gene3D	Transferase(Phosphotransferase) domain 1	7	303	-	-
	Mepo6g04386	460	Pfam	Protein kinase domain	17	271	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo6g04386	460	SUPERFAMILY	Protein kinase-like (PK-like)	13	272	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo6g04386	Mepo-Chr6	55950884	55953088	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo6g04386	1	459	CBL-interacting serine-threonine protein kinases	AT5G25110	58.388	0.0	546

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Mepo6g04386		Pkinase	1.5e-75	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo6g04386	-		-	gmx:100804244	724.931