Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04362 ATGACCATAATCACAGCGATGTGGAGTTCAAGCAGAGTCGTCTCCGAAGAAGAACAAACTGAATCTTCTTCTTTCTCAACTTCTCTCTTCAATTTCTCTTCTGGTAACCCTAGAATCGAAGAAACTCGCGGCCTCATGCATGTCTTTCCCGAACAAACCCCTCCTTCTCTTCCGGTTGGACGGAAACCATTGGCTTGTGTTTTGGGAGTACCAAATCACATGACATATGCGGATTTTTGTCAGTTTTGTGGTTCTTTTATTCAGCATATTCTTGAAATGCGTATTGTTAGAATGGAATCCATGGAAGACCGCTACAGTGTTTTGATTCGATTCGATGAACAAGATTCTACTGATGCTTTCTATACTCATTACAATGGTCGACGTTTTTCGTCTCTAGAGGTTGAGGTGTGCCGTGTTGTTTTCACGTTAGATGTGCAGTATACGGGGTCCATTGAACATGCACAACCATCCAATGCTACTTCAACTGAACAGCCTACATGTCCAGTTTGCCTTGAGCGATTAGATCAAGACACGAGTGGAATTCTTACAACCATATGCAATCATTCTTTCCATTGCTCCTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAACAACAAGCTGAAAATTCTATATGTTTTGTTTGTCAAACCACTGAGAACCTTTGGATATGTGTTATATGTGGGTTTGTTGGCTGTGGAAGATATAAAGGAGGGCATGCCATAATACACTGGAAAGAGACGCAGCATTGCTATTCCTTAGAAGTGGAAACTAAGCGTGTCTGGGATTATGTCGGAGACAACTATGTCCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTAGTTGAGCTGAACTCTCACTGTGTGCATGCAGACAGTGGCAGCTGTGGAGATAATGCCATGAGAGAGGCTATACTTAATAGTAAAGTTGAAGCGATTGTCAATGAATACAATGAATTGCTTGCTACACAACTTGAAAACCAAAAATTGTATTTTGAATCCTTATTACAACAAGTAGAACAAGAAACTGAAGGAAAAATTTCCGTAGCAGTTCAGAAGGCTGTCAGTCTCAAACAGCATAAGATTCAGGCGAAGATTGATCGATGTAACAAAGAGAAGAAGTTTCTGGATGAGCTTAATGACAATCTTTTGAAAAACGAGGAGATCTGGAAAGCCAAGTTACTTGAGATCGAAGAGAGGGAGAAAAAGGCTTTAAAGCTGACTACTGATAGGGTAACGGACCTAGAAAAGCAGCTTAGTAACCTCATGGTTTGTCTTGAGGGTGGGAAGATGGAAGAACACCCGCCATTGTCAAATGCAAATGATGGAACTGTCTCTAACATTTCAAAAGTATCCTCAGTCAACTTGTAG 1389 0.4096 MTIITAMWSSSRVVSEEEQTESSSFSTSLFNFSSGNPRIEETRGLMHVFPEQTPPSLPVGRKPLACVLGVPNHMTYADFCQFCGSFIQHILEMRIVRMESMEDRYSVLIRFDEQDSTDAFYTHYNGRRFSSLEVEVCRVVFTLDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAENSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNSHCVHADSGSCGDNAMREAILNSKVEAIVNEYNELLATQLENQKLYFESLLQQVEQETEGKISVAVQKAVSLKQHKIQAKIDRCNKEKKFLDELNDNLLKNEEIWKAKLLEIEEREKKALKLTTDRVTDLEKQLSNLMVCLEGGKMEEHPPLSNANDGTVSNISKVSSVNL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04362 462 CDD RRM_BRAP2_like 66 146 - -
Mepo6g04362 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 288 IPR013083 -
Mepo6g04362 462 ProSiteProfiles Zinc finger RING-type profile. 167 207 IPR001841 -
Mepo6g04362 462 ProSiteProfiles Zinc finger UBP-type profile. 201 294 IPR001607 GO:0008270
Mepo6g04362 462 Pfam Ring finger domain 166 207 IPR001841 -
Mepo6g04362 462 Pfam Zn-finger in ubiquitin-hydrolases and other protein 218 277 IPR001607 GO:0008270
Mepo6g04362 462 Pfam BRCA1-associated protein 2 58 154 IPR011422 -
Mepo6g04362 462 SUPERFAMILY RING/U-box 183 282 - -
Mepo6g04362 462 Coils Coil 328 348 - -
Mepo6g04362 462 PANTHER BRCA1-ASSOCIATED PROTEIN 16 456 - -
Mepo6g04362 462 SMART ring_2 167 206 IPR001841 -
Mepo6g04362 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 209 IPR013083 -
Mepo6g04362 462 SMART Zf_UBP_1 217 266 IPR001607 GO:0008270
Mepo6g04362 462 CDD RING-H2_BRAP2 165 208 IPR047243 -
Mepo6g04362 462 Coils Coil 372 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04362 Mepo-Chr6 55653664 55658534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04362 163 207 C3H Transcription Factor Family AT1G72220 48.936 2.15e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04362 K10632 - gmx:100794688 746.503