Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04309 ATGGTTCACGTTGCATTTTACAGAAACTATGGGAAAACCTTCAAGAAGCCTCGTCGTCCATATGAGAAGGAGCGTTTGGATGCTGAACTGAAACTTGTGGGAGAGTACGGTCTTCGGTGTAAGAGAGAGCTATGGAGGGTTCAATATGCTCTTAGCCGTATCCGTAACAACGCTAGGACGCTTTTGACATTGGATGAGAAGAATCCTCGTCGGATCTTTGAGGGTGAAGCACTTTTGAGGAGAATGTTCAAGCATGGTTTGCTTGATGAAACACAGAACAAGCTTGATTATGTATTGGCTCTTACTGTTGAGAATTTTCTTGAGCGCCGTCTTCAGACACTTGTTTTCAAATCTGGCATGGCTAAGTCTATTCACCATGCTAGGGTTCTTATCAGGCAGAGACACATTAGGGTTGGGAGGCAGGTTGTTAACATCCCATCCTTCATGGTGAGGGTTGATTCACAGAAGCACATTGACTTTTCCCTCACCAGTCCCTTTGGTGGTGGTCTTCCTGGTCGCGTCAAGCGAAAGAACCTTAAGGCTGCAGCCAAGAAGGCTTCTGGTGGTGATGGAGATGGAGATGAGGAGGATCAAGATTAA 600 0.46 MVHVAFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARTLLTLDEKNPRRIFEGEALLRRMFKHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKNLKAAAKKASGGDGDGDEEDQD 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04309 199 SMART s4_6 109 180 IPR002942 GO:0003723
Mepo6g04309 199 MobiDBLite consensus disorder prediction 178 199 - -
Mepo6g04309 199 NCBIfam 30S ribosomal protein S4 11 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
Mepo6g04309 199 SUPERFAMILY Alpha-L RNA-binding motif 12 159 - -
Mepo6g04309 199 Gene3D - 108 164 IPR036986 GO:0003723
Mepo6g04309 199 ProSiteProfiles S4 RNA-binding domain profile. 109 183 - -
Mepo6g04309 199 FunFam 40S ribosomal protein S9 108 188 - -
Mepo6g04309 199 Pfam S4 domain 109 152 IPR002942 GO:0003723
Mepo6g04309 199 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Mepo6g04309 199 CDD S4 109 153 - -
Mepo6g04309 199 PANTHER 30S 40S RIBOSOMAL PROTEIN 10 183 IPR022801 GO:0003735|GO:0015935|GO:0019843
Mepo6g04309 199 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Mepo6g04309 199 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04309 Mepo-Chr6 55142120 55143226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04309 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 90.909 5.37e-125 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04309 K02997 - gmx:100305663 347.051