Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04278 ATGGATTCAGAAGCTGAAAATTCACAAACCCATATGAGGATTAAGACTCAGCTATGCAGAAGATTCATGCAAGGAACGTGTCCTCTTGTTGCACCCCAATGCAACTATGCACATGGCTACAACGACCTCAGAACAGCAACAGGACCAAGATTCTGTAGAATGTTCATGCACACCAGACATTGTAGCTACGGACACAACTGTCGTTTCCTTCATGCAACTCCTCCTCTACCTCTTCATCATGGTCATCCTCAGCAGCAGCAGCATGAGAACTTTTCTCCACAACCACAACCAGGGATGATACAAAATGCAGAATGCAGGATCATGCAAACTTCTGCTGCTGCTACAACTAATGGCCACTCTTCTGCACAAAACAACACAACGCAATTGCAAACTTATAGCTCTACTCTTGCTACAAATACGTCAGCCATCACAGTGGCAACTACCTCTTTACATAAGAATGGGCCCTATGCTGGTAAATCCTTATCTGACAAAAACACAATGCAAAGGGTCATTCGTCTCTATGCTGATTGGATTTAA 537 0.4376 MDSEAENSQTHMRIKTQLCRRFMQGTCPLVAPQCNYAHGYNDLRTATGPRFCRMFMHTRHCSYGHNCRFLHATPPLPLHHGHPQQQQHENFSPQPQPGMIQNAECRIMQTSAAATTNGHSSAQNNTTQLQTYSSTLATNTSAITVATTSLHKNGPYAGKSLSDKNTMQRVIRLYADWI 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04278 178 Gene3D - 2 76 - -
Mepo6g04278 178 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Mepo6g04278 178 MobiDBLite consensus disorder prediction 83 99 - -
Mepo6g04278 178 PANTHER CCCH ZINC FINGER/TIS11-RELATED 7 104 IPR045877 GO:0003729
Mepo6g04278 178 SUPERFAMILY CCCH zinc finger 49 72 IPR036855 GO:0046872
Mepo6g04278 178 SUPERFAMILY CCCH zinc finger 10 45 IPR036855 GO:0046872
Mepo6g04278 178 MobiDBLite consensus disorder prediction 78 99 - -
Mepo6g04278 178 ProSiteProfiles Zinc finger C3H1-type profile. 13 41 IPR000571 GO:0046872
Mepo6g04278 178 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Mepo6g04278 178 SMART c3hfinal6 13 40 IPR000571 GO:0046872
Mepo6g04278 178 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 15 39 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04278 15 72 C3H Transcription Factor Family AT1G68200 40.625 3.01e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo6g04278 zf-CCCH 8.8e-05 CL0537