Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04267 ATGGATCGCAATCCCCTCTCTTTTACTTGTTGTCCGTTGCATTCCTCAAACGATTTTTTCTACGATGCAAGTTCTTTCCTCAGCAAGGAAAAGGAATTATCAGCTGATTTTCCTGGCCTTTTAATTATATTCGATGAAGGAAAATCATCAAATGGCGATGCCTTTGATTTCTTGTTGGAAATTTTCAAGGAATTGTTATCATCAAATTGCCTCTTAACTGGCAGTAGTAAGACAACTAAGAAAGATTCTGAAAAGGATTCTGTGTTCAAACATGGTTCTGACAAGGAGGTTGAACAGGAGAGGTATGAATTTGTTAAGATCATTCACCGTGAACTTGAGTTACTGCAATTGAAATCCAATCTAGGATGCATACCGGCGGAGGCGGAGGCGGAGGCGGAGAGCAAAGAAAGAAAGATGGTTCACGTTGCATTTTACAGAAACTATGGGAAAACCTTCAAGAAGCCTCGTCGTCCATATGAGAAGGAGCGTTTGGATGCTGAACTGAAACTTGTGGGAGAGTACGGTCTTCGGTGTAAGAGAGAGCTATGGAGGGTTCAATATGCTCTTAGCCGTATCCGTAACAACGCTAGGACGCTTTTGACATTGGATGAGAAGAATCCTCGTCGGATCTTTGAGGGTGAAGCACTTTTGAGGAGAATGTTCAAGCATGGTTTGCTTGATGAAACACAGAACAAGCTTGATTATGTATTGGCTCTTACTGTTGAGAATTTTCTTGAGCGCCGTCTTCAGACACTTGTTTTCAAATCTGGCATGGCTAAGTCTATTCACCATGCTAGGGTTCTTATCAGGCAGAGACACATTAGGGTTGGGAGGCAGGTTGTTAACATCCCATCCTTCATGGTGAGGGTTGATTCACAGAAGCACATTGACTTTTCCCTCACCAGTCCCTTTGGTGGTGGTCTTCCTGGTCGCGTCAAGCGAAAGAACCTTAAGGCTGCAGCCAAGAAGGCTTCTGGTGGTGATGGAGATGGAGATGAGGAGGATCAAGATTAA 1014 0.4359 MDRNPLSFTCCPLHSSNDFFYDASSFLSKEKELSADFPGLLIIFDEGKSSNGDAFDFLLEIFKELLSSNCLLTGSSKTTKKDSEKDSVFKHGSDKEVEQERYEFVKIIHRELELLQLKSNLGCIPAEAEAEAESKERKMVHVAFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARTLLTLDEKNPRRIFEGEALLRRMFKHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKNLKAAAKKASGGDGDGDEEDQD 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04267 337 SUPERFAMILY Alpha-L RNA-binding motif 150 297 - -
Mepo6g04267 337 Pfam Ribosomal protein S4/S9 N-terminal domain 146 246 IPR001912 GO:0019843
Mepo6g04267 337 Pfam S4 domain 247 290 IPR002942 GO:0003723
Mepo6g04267 337 NCBIfam 30S ribosomal protein S4 149 304 IPR005710 GO:0003735|GO:0006412|GO:0015935
Mepo6g04267 337 MobiDBLite consensus disorder prediction 316 337 - -
Mepo6g04267 337 ProSitePatterns Ribosomal protein S4 signature. 245 269 IPR018079 GO:0019843
Mepo6g04267 337 FunFam 40S ribosomal protein S9 246 326 - -
Mepo6g04267 337 Gene3D - 246 302 IPR036986 GO:0003723
Mepo6g04267 337 PANTHER 30S 40S RIBOSOMAL PROTEIN 148 321 IPR022801 GO:0003735|GO:0015935|GO:0019843
Mepo6g04267 337 SMART s4_6 247 318 IPR002942 GO:0003723
Mepo6g04267 337 ProSiteProfiles S4 RNA-binding domain profile. 247 321 - -
Mepo6g04267 337 SMART Ribosomal_S4_2 146 246 IPR001912 GO:0019843
Mepo6g04267 337 CDD S4 247 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04267 Mepo-Chr6 54855348 54858671 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04267 139 325 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 90.909 6.89e-124 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04267 K02997 - gmx:100305663 347.051