Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04248 ATGTCATCACAAATGAGTGGTAGCAACTTCCACAGTTCCATTGAATGTACCAATAATAAGATGAATATTATTCAGGAGACTGAGCTTACCCTTGGTCTTCCCGGTAGTAGTACCAAAACTGCTGGCATAAAACGTAGCTTCTCTCAAACTCACCTTGATCTTCATCTTGCCACCTCAACTTCTAGTAGTACTTCTCATCATCATAATTCACCAAATTCTAATAATACCACTAAATTCCCAACAACATCAAAGGAACATGTGGTGGGATGGCCACCGGTGAGGGCAAGTAGGAAAAATATTGGGATGAAGAATAGTATTTGCAAGTACGTGAAAGTTGCGGTTGATGGAGCTCCGTATCTAAGAAAAGTGGATCTTGAAGTTTATGAGAGTTATAACAATCTTATCACCTCATTGAATACCATGTTTGCTACTAATTGCTTCACTATTTGTAATGATTTGATGAATGAAAAGAAGTTCATGGATTCTAGAAAAAATAGGAATGAATACATGGCTACCTACGAGGATAAAGATGGTGACTGGATGTTGCTTGGGGATGTACCCTGGAAGATGTTTGTTGAATCATGTAAGAGGATAAGGCTTATGATTAGCTCGGAGGACAATATTGATTTTGGTTCCAGATGTACGGCCTCCAGTGAGAAGAATAATTATAGCTAG 675 0.3852 MSSQMSGSNFHSSIECTNNKMNIIQETELTLGLPGSSTKTAGIKRSFSQTHLDLHLATSTSSSTSHHHNSPNSNNTTKFPTTSKEHVVGWPPVRASRKNIGMKNSICKYVKVAVDGAPYLRKVDLEVYESYNNLITSLNTMFATNCFTICNDLMNEKKFMDSRKNRNEYMATYEDKDGDWMLLGDVPWKMFVESCKRIRLMISSEDNIDFGSRCTASSEKNNYS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04248 224 MobiDBLite consensus disorder prediction 58 85 - -
Mepo6g04248 224 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 25 205 IPR003311 GO:0005634|GO:0006355
Mepo6g04248 224 Gene3D - 102 212 - -
Mepo6g04248 224 ProSiteProfiles PB1 domain profile. 107 207 IPR000270 GO:0005515
Mepo6g04248 224 Pfam AUX/IAA family 30 206 IPR033389 -
Mepo6g04248 224 SUPERFAMILY CAD & PB1 domains 102 202 - -
Mepo6g04248 224 MobiDBLite consensus disorder prediction 58 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04248 Mepo-Chr6 54590272 54591667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04248 92 198 B3 DNA Binding Superfamily AT4G23980 32.110 1.14e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mepo6g04248 AUX_IAA 1.1e-47 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04248 K14484 - gmx:100815098 196.823