Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04246 ATGGCAAAGGGTTGTTCCACTACCAGTAACAAGTACGAAGCTGCTAGAGAACAAAGACTTGAGGAAAACAAGAAGAGGTTTGAGGATTTAGGAATTTCAAATATTTCCAAAACATTGACTGAAATCGCAAGTCCAGCAAAGAAATCCACGAATCGTCTTTTCAGACTAAAATCAAAGACTAATGTTGTTCTGGAACCTAGGCGCTCTTCTCGTGCCAGAAACACAGTTCCTTCGTATGCTGAAGAGTTTGGCACAGACCTTCCACAGTTGCGGAGGAGGTCAAGGTCAAGTTCATCATGGGGAAGCTACGCTTACGCTGCGAGGCCACTGGATGAAATCAAGGTAGCTACAGCTCAAGAAAGAAAGCGTGCTTGGGATGCGGCAGAGGCACTCCAAATCAATTTGCAGTCTTCAAATCCATCATTTATTAAGTCAATGCTCCGGTCTCATGTTTATAGCTGTTTTTGGTTGGGTCTTCCCAGTAGATTTTGTGCGGAACATCTTCCAAAGACAGATGATAACATGGTTTTAGAGGATGAAAAAGGCTCAGAATATGATGCTGTTTACCTTGCCCATAAAACTGGGCTTAGTGGTGGCTGGAGAGGATTTGCATTGGAACATAAATTGGACGATGGTGATGCAGTAGTTTTTGAATTGGTTGAAGCAGCAAGATTTAAGGTTTATATTGTTAGAGCATTTGAAAATATAGATGAAGAGGAAGAAAAAGAAGAAAGCGATGCTTTGGTGGAAGATGGAAATATGCACACATCTAAAGCAGTCAAAAAATCTGAAACTGTGAAACCAAAGGAAGCTACAAAGAAAACTAGAATGCAAAAGGTATCTAAAGTACCTACACCTGAGCCAAAGTCTGAAACTGTTAAATCAAAGGAAACTTCTAGGAAAACAAGATCTTCTCAGAACAAAAAGCAAAAGATATCGGATGTATCTACTGCAATTGAGCCAAAAGAGGATGCACACCTCGAAATAGTGAAACCAGAGGCAGCTACAAAGTTGCCAAACAAGAAAAGGAAGGCAAAAGAAGGTGATGTATCTGAGAAGATTATTTTGGAAGATAATGCTAAAGCAATGAAGACTGACTCAGAGAAGAAGGAAGAACTTGTTGAGGATGTTGATGTTGAGCTAAAGAAAGTTAAGCTAGATGATAAAGCAAGCAAACCTGCTGCAGAAAAACCTCGGAAAATTCGAGCTCCAAAGTTTTTCAGAAAGAGAGGTTAG 1236 0.4021 MAKGCSTTSNKYEAAREQRLEENKKRFEDLGISNISKTLTEIASPAKKSTNRLFRLKSKTNVVLEPRRSSRARNTVPSYAEEFGTDLPQLRRRSRSSSSWGSYAYAARPLDEIKVATAQERKRAWDAAEALQINLQSSNPSFIKSMLRSHVYSCFWLGLPSRFCAEHLPKTDDNMVLEDEKGSEYDAVYLAHKTGLSGGWRGFALEHKLDDGDAVVFELVEAARFKVYIVRAFENIDEEEEKEESDALVEDGNMHTSKAVKKSETVKPKEATKKTRMQKVSKVPTPEPKSETVKSKETSRKTRSSQNKKQKISDVSTAIEPKEDAHLEIVKPEAATKLPNKKRKAKEGDVSEKIILEDNAKAMKTDSEKKEELVEDVDVELKKVKLDDKASKPAAEKPRKIRAPKFFRKRG 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04246 411 MobiDBLite consensus disorder prediction 387 401 - -
Mepo6g04246 411 MobiDBLite consensus disorder prediction 240 349 - -
Mepo6g04246 411 CDD B3_DNA 140 231 IPR003340 GO:0003677
Mepo6g04246 411 MobiDBLite consensus disorder prediction 289 308 - -
Mepo6g04246 411 ProSiteProfiles B3 DNA-binding domain profile. 142 233 IPR003340 GO:0003677
Mepo6g04246 411 Gene3D - 115 235 IPR015300 -
Mepo6g04246 411 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 68 235 IPR044837 -
Mepo6g04246 411 Pfam B3 DNA binding domain 142 231 IPR003340 GO:0003677
Mepo6g04246 411 SMART B3_2 142 233 IPR003340 GO:0003677
Mepo6g04246 411 MobiDBLite consensus disorder prediction 248 277 - -
Mepo6g04246 411 MobiDBLite consensus disorder prediction 387 411 - -
Mepo6g04246 411 MobiDBLite consensus disorder prediction 315 349 - -
Mepo6g04246 411 SUPERFAMILY DNA-binding pseudobarrel domain 135 231 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04246 Mepo-Chr6 54561432 54566305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04246 12 237 B3 DNA Binding Superfamily AT5G58280 47.059 2.87e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo6g04246 B3 8.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04246 - - gmx:100786265 362.073