Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04203 ATGGATAAAGATCATAAGCATGGTTATGAGAAAACCTATGAAGAGTCAGAAAAGAGGATGAAAAGGTCTTCTTGTTCACAATCAAGTGATGAAGATGATGCTAAGGATGATGTTTCTGTTCAAGAATCTACACATCAGTGCAATGTTTGTGGGAAAACTTTTAGCAATGGAAAAGCATTGGGTGGTCACCGGAGATCTCACTTTCTTAAGAAGAAACTTAATCATCGTTCACAAAAGGTAGAAACCCCTCTCTCAATGCAAGGTAGTTATAATAGGTCTATTTTTGATAAAGATCGTAAGCATGGTTTTGAGAACACCTGCAAAGAGTCGGAAAAGAGGATAAAGAGGTCTTCTTGTTCTCTATCAAGTGATGAAGATGATGCTAAGGATGAGGTTTCTATTCAAGAACCTACACATCAGTGCAATGTTTGTGGAAAAACTTTTAGTAATGGAAAGGCATTGGGTGGTCACCGGAGATCTCACTTTCTTAAGCAGAAACTTCATCATCATTCACAAAAGGTGGAGACCCCTTTCTCAATACAAGGAAATAATAATATGGCTAGTTTTGATAAAGATCATAAGCATGATCGTGAGGATACCTATGAAGAGTCAGAAAAGAGGATGAAAAGGTCAGCTTGTGTGCTATCAAGTGATGAAGATGAAGCCAAGAATGAGGTTTCTGTTCAAGAACCTACACATCAGTGCAATGTTTGTGGAAAAACTTTTAGCAATGGAAAATCATTGGGTGGTCACCGGAGATCTCACTTTCTTAAGAAGAAACTCTCTCATCAGCCACAAAAGGTGAAAACCCCTTTCTCAACACATGGTAGTAATAATAGGGCTAGTTTTGATGATTATGATGATGAAGAAGAAATTGATGGCATAGAGAAACGAACTTGTTCTCTCTGCAAGAAGGAGTTTCCAACCAAGAATGCTTTGTATGGTCACATGAGGTCTCACCCGAATAGAGATGTTAAAGGACTTAATCCTCCCACTGAACATCATAAAGAAGATCAAGATGATGGTAATTTATCTTTGCCAAAATGGCAAAAGAGGGATAAAAGAGGTAGAAAGTGTATTGGTAGTGCTGAGGCGGCTGCAAATCTTCTGCTCCTTCGTTATGACAGGTACTTTTGTGTTGGTGAATCATCATCAAATGGGAATGGCAAGAATGAGCTTGGTTGTGATAGAAACAGTGCTGATAAGCAGCTGAAGAAAGGAAAGGGTATATTTGATTTAAATGAGTCGTATGTTATAGAGGACTAA 1266 0.3831 MDKDHKHGYEKTYEESEKRMKRSSCSQSSDEDDAKDDVSVQESTHQCNVCGKTFSNGKALGGHRRSHFLKKKLNHRSQKVETPLSMQGSYNRSIFDKDRKHGFENTCKESEKRIKRSSCSLSSDEDDAKDEVSIQEPTHQCNVCGKTFSNGKALGGHRRSHFLKQKLHHHSQKVETPFSIQGNNNMASFDKDHKHDREDTYEESEKRMKRSACVLSSDEDEAKNEVSVQEPTHQCNVCGKTFSNGKSLGGHRRSHFLKKKLSHQPQKVKTPFSTHGSNNRASFDDYDDEEEIDGIEKRTCSLCKKEFPTKNALYGHMRSHPNRDVKGLNPPTEHHKEDQDDGNLSLPKWQKRDKRGRKCIGSAEAAANLLLLRYDRYFCVGESSSNGNGKNELGCDRNSADKQLKKGKGIFDLNESYVIED 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04203 421 ProSiteProfiles Zinc finger C2H2 type domain profile. 298 325 IPR013087 -
Mepo6g04203 421 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 260 IPR013087 -
Mepo6g04203 421 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 166 IPR013087 -
Mepo6g04203 421 ProSitePatterns Zinc finger C2H2 type domain signature. 300 320 IPR013087 -
Mepo6g04203 421 MobiDBLite consensus disorder prediction 266 280 - -
Mepo6g04203 421 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 22 268 IPR044653 GO:0003700
Mepo6g04203 421 Gene3D Classic Zinc Finger 42 161 - -
Mepo6g04203 421 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Mepo6g04203 421 ProSitePatterns Zinc finger C2H2 type domain signature. 235 255 IPR013087 -
Mepo6g04203 421 Pfam C2H2-type zinc finger 139 161 - -
Mepo6g04203 421 Pfam C2H2-type zinc finger 299 321 - -
Mepo6g04203 421 Pfam C2H2-type zinc finger 45 67 - -
Mepo6g04203 421 Pfam C2H2-type zinc finger 233 255 - -
Mepo6g04203 421 Gene3D Classic Zinc Finger 230 320 - -
Mepo6g04203 421 SMART c2h2final6 139 161 IPR013087 -
Mepo6g04203 421 SMART c2h2final6 233 255 IPR013087 -
Mepo6g04203 421 SMART c2h2final6 45 67 IPR013087 -
Mepo6g04203 421 SMART c2h2final6 298 320 IPR013087 -
Mepo6g04203 421 MobiDBLite consensus disorder prediction 317 348 - -
Mepo6g04203 421 MobiDBLite consensus disorder prediction 314 348 - -
Mepo6g04203 421 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Mepo6g04203 421 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Mepo6g04203 421 MobiDBLite consensus disorder prediction 259 285 - -
Mepo6g04203 421 SUPERFAMILY beta-beta-alpha zinc fingers 232 320 IPR036236 -
Mepo6g04203 421 SUPERFAMILY beta-beta-alpha zinc fingers 44 161 IPR036236 -
Mepo6g04203 421 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04203 Mepo-Chr6 54177272 54178537 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04203 233 336 C2H2 Transcription Factor Family AT2G26940 36.697 1.76e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo6g04203 zf-C2H2_6 6.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04203 - - mtr:112419466 535.028