Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04190 ATGTCTACACCATTAGAACATGATTACATAGGTTTAGCAAATAATCCTTCAATGGACAAAACATCTTCATCTCTCAACTTCAAGGAAACTGAGCTCAGACTAGGCTTACCTGGTTGTGAATCTCCTGATAGAAAATCAGTTGGTGGTGGAATCTCTTTCTTTGCCAACAAGGATTTGAAGAACATTAATGTTTGTTCTCCTTTGAAGAACCTTGTAGCTAGTGTTGGAGCTAAAAGAGGTTTCTCTGATGCTATTGATGAGTCTTCTAAGAAATGGAGTTTCTCTATGAATGATGGATCTGATGGAACTGCTGGTTTAGAGACTCAAACTAATATTCAAAAGATTAATACAAATGCAACAAAAAACATCAAAGAGGTTCTTCATCAATCTGTACATGAAAAGAATAAACAGGTTAATGGAACAAATGAGCATGCTAATGCTCCTGCTTCAAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCGTTTCGAAAAAACACTATCGCTTCTAATTTGTCAAAGAACAATGACGAAGCTGAGGGAAAACCTGGATTTGACTGTCTCTATGTAAAAGTCAGTATGGATGGTGCTCCTTATCTCAGAAAGGTTGATCTCAAGACCTACAACAACTATATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCACCTGCTTTACCATTGGCCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACTTATGAAGATAAAGATGGAGATTGGATGCTTGTAGGCGATGTTCCTTGGGGGATGTTCGCTGACTCGTGTAGGAGACTAAGGATCATGAAAGGCTCTGAGGCAATTGGGCTAGGTATGAAAGTTTACACTCTAGGTTCTTCTAAGGAGATTGTTAACAAATTATTGCATTAA 945 0.3894 MSTPLEHDYIGLANNPSMDKTSSSLNFKETELRLGLPGCESPDRKSVGGGISFFANKDLKNINVCSPLKNLVASVGAKRGFSDAIDESSKKWSFSMNDGSDGTAGLETQTNIQKINTNATKNIKEVLHQSVHEKNKQVNGTNEHANAPASKAQVVGWPPIRSFRKNTIASNLSKNNDEAEGKPGFDCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFTCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFADSCRRLRIMKGSEAIGLGMKVYTLGSSKEIVNKLLH 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04190 314 Pfam AUX/IAA family 29 296 IPR033389 -
Mepo6g04190 314 ProSiteProfiles PB1 domain profile. 187 289 IPR000270 GO:0005515
Mepo6g04190 314 FunFam Auxin-responsive protein 182 299 - -
Mepo6g04190 314 Gene3D - 184 302 - -
Mepo6g04190 314 SUPERFAMILY CAD & PB1 domains 187 288 - -
Mepo6g04190 314 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 294 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04190 Mepo-Chr6 53973661 53976441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04190 190 310 B3 DNA Binding Superfamily AT2G46530 33.058 2.87e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mepo6g04190 AUX_IAA 1.2e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04190 K14484 - gmx:100804423 412.149