Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04178 ATGAAACAAACAACAAACTGTTTCTCACATTCAAATTCAAACTCTTCAAAACCTCAAAAAACAGAGACAAAGAAACAGAGCAAGGTGAAGAGAAACAGAGACTTCAACAACCACCTTATTTACCACGGCGTTCGAATGCGAAGCTGGGGCAAATGGGTATCTGAAATCCGCGAACCTCGCAAAAAATCACGAATCTGGCTTGGAACATACGCTACTCCTGAAATGGCAGCTAGAGCACATGATGTTGCTGCTTTAAGCATAAAGGGTCATTCTCCAATCCTTAACTTCCCCGAAATAGCTCACATGCTTCCAAGACCAACAACGTTGTCTCCGCGTGACATTCAACTTGCAGCTGCAGAAGCTGCTGCCATGGTGGAATTTGATTCTCAAATATTACACTCAACAATCTCACTAAGCTCTGAAGTCTCTGACTCGCCTTCATATTCATCAGAGTCTTCAGAGTTGAGCGAAATTGTTGAGCTTCCTAATGTAGAAGAAAGTTATGACTCGGTTGAGGTGAGAAGTGAGTTTATGTTGATTGACTCGGTTGAAAGTTGGGTGTATCCGTCAGTAGAAAGTTTTTGGAACATGATGGTTGAAGAACAGAGTTTTTTGTTATAA 621 0.4155 MKQTTNCFSHSNSNSSKPQKTETKKQSKVKRNRDFNNHLIYHGVRMRSWGKWVSEIREPRKKSRIWLGTYATPEMAARAHDVAALSIKGHSPILNFPEIAHMLPRPTTLSPRDIQLAAAEAAAMVEFDSQILHSTISLSSEVSDSPSYSSESSELSEIVELPNVEESYDSVEVRSEFMLIDSVESWVYPSVESFWNMMVEEQSFLL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04178 206 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Mepo6g04178 206 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Mepo6g04178 206 FunFam Ethylene-responsive transcription factor 2 39 98 - -
Mepo6g04178 206 CDD AP2 40 98 IPR001471 GO:0003700|GO:0006355
Mepo6g04178 206 MobiDBLite consensus disorder prediction 1 20 - -
Mepo6g04178 206 Gene3D AP2/ERF domain 40 99 IPR036955 GO:0003700|GO:0006355
Mepo6g04178 206 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 168 - -
Mepo6g04178 206 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Mepo6g04178 206 MobiDBLite consensus disorder prediction 1 34 - -
Mepo6g04178 206 Pfam AP2 domain 41 90 IPR001471 GO:0003700|GO:0006355
Mepo6g04178 206 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Mepo6g04178 206 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04178 Mepo-Chr6 53900467 53901179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04178 6 189 AP2-EREBP Transcription Factor Family AT5G11590 54.124 7.17e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo6g04178 AP2 2.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04178 K09286 - gmx:100784419 254.218