Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04162 ATGATCTCCGCAACCAGATGCACCTTCCTGGGTAACTCAGGATTAGGTGGGAGTGGTAACATCTGTGGTGGACAGAGAAGGGGTTATGGACCTTGGAGAGTGACGTGTATGTCACCAATCAATGATAGAAATGGCAGTGTTGTTAATGTGATGGAGACACCTTTGAAAGAAATTAAAAAGGAGGCGGTGGTGGAAGATGTAGATGATAATCCGATCTCTGGTGGCGGTCCTCGCGATGTTTATGGCGAGGATAAGGCCACTGAGGATCACTTTGTGACTCCTTGGAGTGTTTCTGTTGCTAGTGGTTATACATTGTTGCGAGATCCACACTTCAACAAAGGGTTGGCCTTCACTGAAAAAGAGAGGGATGCACACTACTTGCGTGGTCTTCTTCCCCCAACAACTATTCCTCAAGAAACTCAGGTGAGGAAAATGATCCAGCACATACGCCAATATCAAGTTCCGCTGCAGAGATACATGGCAATGATGGATCTTCAGGAGAGAAATGAACGTCTGTTTTATAAACTTCTCATTGATCACGTTGAAGAATTACTCCCAATTGTGTATACTCCAACTGTTGGTGAAGCTTGCCAGAAATACGGGGACATTTTTATGCGTCCACAGGGTCTTTATATAAGTTTGAAAGAGAAGGGGAGGATTCAAGAAGTACTGAGAAATTGGCCTGAGAAGAACATTCAAGTCATAGTCGTAACTGACGGAGAACGGATCTTGGGTCTTGGGGATCTAGGTTGTCAGGGAATGGGAATACCTGTGGGAAAACTTTCTTTATATACTGCACTAGGAGGAGTTCGTCCTTCAGCTTGCCTGCCTATTACTATTGATGTCGGGACAAACAATGAGAGGCTGCTCAATGATGAATTATATATCGGGCTAAAGCAAAGACGAGCAACTGGGCAGGAATATTCTGAACTCATGCACGAATTTATGACTGCAGTCAAGCAAACTTATGGTGAAAAAGTCTTAATTCAGTTTGAAGACTTCGCGAACCACAATGCTTTTGATCTGCTTGAAAAATATAGATCAACACATCTGGTTTTCAACGACGATATTCAGGGAACGGCGTCAGTTGTTCTTGCTGGACTAGTTGCAGCTTTGAAATTGGTTGGGGGAAACTTAGCTGACCACAAATTCTTATTCCTTGGTGCCGGCGAGGCGGGCACTGGAATTGCAGAGCTCATTGCACTTGAAACATCTAAACAGACAAATGCCCCATTGGATGAAGTGCGCAAGAATATTTGGTTGGTGGACTCAAAGGGATTGATTGTCAGTTCCCGTAAAGAATCACTCCAACATTTCAAGAAGCCGTGGGCTCATGAACACGAACCTGTTAAAAACCTTCTTGATGCTGTTAATAAAATTAAGCCAACAGTGCTTATTGGAACATCGGGACAAGGAAGTGCGTTTACCAAAGAGGTGGTTGAGGCGATGGCCTCTATTAACGAGAAACCTATTATTCTTTCTCTTTCCAACCCAACGTCACAGTCCGAATGTACTGCTGAAGAAGCTTATACGTGGACACAGGGACGTGCGATCTTTGCAAGTGGGAGCCCATTTTCACCGGTTGAATATAAGGGGAAAGTGTTTGTGCCTGGCCAGGCAAATAATGCATACATATTCCCTGGGTTCGGCCTAGGTTTAATAATGTCCGGGACCATTCGTGTGCATGATGACCTGCTTTTGGCTGCCTCTGAGGCATTGGCTGAACAAGTATCAGAAGAGAACTTTGAGAAGGGTTTGATATTCCCACCATTCACCAACATCAGAAAGATTTCAGCTCACATAGCTGCCAAAGTTGCTGCTAAAGCTTATGAACTTGGCTTGGCCACTCGTCTTCCACAGCCGAAAGATTTGGTGAAGTTTGCCGAGAGCTGTATGTATACCCCGGCCTACAGAAGCTACCGGTGA 1926 0.4476 MISATRCTFLGNSGLGGSGNICGGQRRGYGPWRVTCMSPINDRNGSVVNVMETPLKEIKKEAVVEDVDDNPISGGGPRDVYGEDKATEDHFVTPWSVSVASGYTLLRDPHFNKGLAFTEKERDAHYLRGLLPPTTIPQETQVRKMIQHIRQYQVPLQRYMAMMDLQERNERLFYKLLIDHVEELLPIVYTPTVGEACQKYGDIFMRPQGLYISLKEKGRIQEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNERLLNDELYIGLKQRRATGQEYSELMHEFMTAVKQTYGEKVLIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHKFLFLGAGEAGTGIAELIALETSKQTNAPLDEVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPVKNLLDAVNKIKPTVLIGTSGQGSAFTKEVVEAMASINEKPIILSLSNPTSQSECTAEEAYTWTQGRAIFASGSPFSPVEYKGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALAEQVSEENFEKGLIFPPFTNIRKISAHIAAKVAAKAYELGLATRLPQPKDLVKFAESCMYTPAYRSYR 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04162 641 CDD NAD_bind_1_malic_enz 357 635 - -
Mepo6g04162 641 ProSitePatterns Malic enzymes signature. 353 369 IPR015884 GO:0004471
Mepo6g04162 641 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 357 640 IPR036291 -
Mepo6g04162 641 Pfam Malic enzyme, N-terminal domain 166 347 IPR012301 GO:0004471
Mepo6g04162 641 Gene3D - 100 354 IPR037062 GO:0004471
Mepo6g04162 641 FunFam Malic enzyme 100 354 - -
Mepo6g04162 641 Pfam Malic enzyme, NAD binding domain 357 609 IPR012302 GO:0051287
Mepo6g04162 641 FunFam Malic enzyme 355 641 - -
Mepo6g04162 641 PIRSF ME 58 641 IPR001891 GO:0004470|GO:0004471
Mepo6g04162 641 PRINTS Malic enzyme signature 487 503 IPR001891 GO:0004470|GO:0004471
Mepo6g04162 641 PRINTS Malic enzyme signature 384 400 IPR001891 GO:0004470|GO:0004471
Mepo6g04162 641 PRINTS Malic enzyme signature 232 261 IPR001891 GO:0004470|GO:0004471
Mepo6g04162 641 PRINTS Malic enzyme signature 268 290 IPR001891 GO:0004470|GO:0004471
Mepo6g04162 641 PRINTS Malic enzyme signature 353 369 IPR001891 GO:0004470|GO:0004471
Mepo6g04162 641 PRINTS Malic enzyme signature 172 196 IPR001891 GO:0004470|GO:0004471
Mepo6g04162 641 PRINTS Malic enzyme signature 328 346 IPR001891 GO:0004470|GO:0004471
Mepo6g04162 641 SMART Malic_M_2 357 610 IPR012302 GO:0051287
Mepo6g04162 641 Gene3D - 355 641 - -
Mepo6g04162 641 SMART malic_2 166 347 IPR012301 GO:0004471
Mepo6g04162 641 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 84 356 IPR046346 -
Mepo6g04162 641 PANTHER MALIC ENZYME-RELATED 75 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04162 Mepo-Chr6 53755492 53760629 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04162 K00029 - gmx:100791514 1112.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g04364 1 51287650 51292804 Mepo6g04162 6 53755492 53760629 ECH
Mepo2g04857 2 56810894 56827494 Mepo6g04162 6 53755492 53760629 ECH
Mepo3g07648 3 89771390 89776754 Mepo6g04162 6 53755492 53760629 ECH
Mepo6g04162 6 53755492 53760629 Mepo6g04162 6 53755492 53760629 ECH
Mepo6g04162 6 53755492 53760629 Mepo3g07648 3 89771390 89776754 ECH
Mepo6g04162 6 53755492 53760629 Mepo1g04364 1 51287650 51292804 PCT