Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04160 ATGACTCGACGTTGCTCTCACTGCAGCAACAACGGCCATAACTCACGGACATGTCCGTCGAGAAGCACCGCCGGGGTGAAGCTTTTTGGTGTTAGATTAACCGATGGATCAATCATCAAGAAAAGTGCGAGTATGGGAAACCTAAACCTCGCTGCTCTTCATCATTGTTCTTCTTCTTCTTCTTCACCGCTGAACCCCGGTTCATCTTTGAATCCCGGTTCACCTTCTTTTGAACCGCCGCATGACCCGGATGGTTATTTGTCTGATGACCCGGTTCATGCTTCTTCTGCTTTCGCTACCCGCCGCAGCAGCGAAAGAAAAAAAGGTGTTCCATGGACTGAGGAAGAACATAGATTGTTCTTGGTTGGTCTCCAAAAGCTAGGCAAAGGAGACTGGCGAGGGATAGCACGTAATTTTGTTGTGTCAAGGACCCCTACTCAAGTAGCAAGTCATGCACAAAAGTACTTTATCCGACAGAGTAATGCTACCAGGAGGAAGAGACGTTCCAGTCTTTTCGACATGGCTCCTGATGTGTGTCCAGATTCAACTTCGATGCCAGAAGAGCAAGTACTACTTCCACCTTCTGAGAACTCACAACCTTGTAATGGAAAATCACAACCATCACTAAATCTGTCTCTCAAGTCAGAATATGAACCAATGGAAGCTACATCTGAAGAAAATGTAGAAGAGGCCAATGAGACTACAATGGGATCAAATGGATTCACACCAATGACTCAAGGATTCTTCCCACCTTATTTACCTGCCTCATTTTCCATATGGCCATCAATTGGAGCTCCCTTTGAAGAAGTCAACAGAGGAGAGACATCGCATCATCAGGTCCTCAAGCCAATACCAGTCATTCCAAAGGAACCTGTCAATGTTGATGAACTTGTGGGAATGTCTCATCTGAGCATTGGGGAAACACAGGCACTTGATAGAGAGCCTTCCCCCCTTTCTTTGAAGTTGTTAGGAGAGCCCTCAAGGCAATCAGCATTCCATGCAAATGCTCCAGTCGGCGGTTCTGATCTAAACAGTGGCAAGAACAACGCCATTCAAGCGGTTTGA 1065 0.4638 MTRRCSHCSNNGHNSRTCPSRSTAGVKLFGVRLTDGSIIKKSASMGNLNLAALHHCSSSSSSPLNPGSSLNPGSPSFEPPHDPDGYLSDDPVHASSAFATRRSSERKKGVPWTEEEHRLFLVGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMAPDVCPDSTSMPEEQVLLPPSENSQPCNGKSQPSLNLSLKSEYEPMEATSEENVEEANETTMGSNGFTPMTQGFFPPYLPASFSIWPSIGAPFEEVNRGETSHHQVLKPIPVIPKEPVNVDELVGMSHLSIGETQALDREPSPLSLKLLGEPSRQSAFHANAPVGGSDLNSGKNNAIQAV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04160 354 MobiDBLite consensus disorder prediction 61 92 - -
Mepo6g04160 354 MobiDBLite consensus disorder prediction 166 212 - -
Mepo6g04160 354 MobiDBLite consensus disorder prediction 61 75 - -
Mepo6g04160 354 ProSiteProfiles SANT domain profile. 112 160 IPR017884 -
Mepo6g04160 354 Pfam Myb-like DNA-binding domain 111 156 IPR001005 -
Mepo6g04160 354 FunFam transcription factor MYB1R1 110 161 - -
Mepo6g04160 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 160 IPR017930 -
Mepo6g04160 354 MobiDBLite consensus disorder prediction 331 354 - -
Mepo6g04160 354 PANTHER TRANSCRIPTION FACTOR KUA1 3 283 - -
Mepo6g04160 354 MobiDBLite consensus disorder prediction 1 21 - -
Mepo6g04160 354 ProSiteProfiles Myb-like domain profile. 104 156 IPR001005 -
Mepo6g04160 354 CDD SANT 111 156 IPR001005 -
Mepo6g04160 354 SMART sant 108 158 IPR001005 -
Mepo6g04160 354 SUPERFAMILY Homeodomain-like 106 161 IPR009057 -
Mepo6g04160 354 Gene3D - 110 161 - -
Mepo6g04160 354 MobiDBLite consensus disorder prediction 188 212 - -
Mepo6g04160 354 NCBIfam myb-like DNA-binding domain, SHAQKYF class 107 159 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04160 Mepo-Chr6 53729978 53734158 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mepo6g04160 Myb_DNA-binding 1.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04160 - - gmx:778036 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g04160 6 53729978 53734158 Mepo6g04160 6 53729978 53734158 ECH