Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04154 ATGAATGAGATGTCAAGAAATGAGAGAGAATCTTCTGAGGAGAGAAAGCTTGAACTGAGGCTTGGTCCACCTGGTGTTGAAGACTGGCTTCACACCAACAACAAACAAAGACTCTCATTTGGTAACTACTTCTCTTCTTCAAACAATGGTTTTCAACATGTGAGAGGTAACAAAGAATCTTCATCATCACAAACCTGTTGTCCTAAGAGAGTAGAGTTACAGAATGGTGATAATAACAAAGTAACAGCTGTTTCCAACACCTCTCAGAAAAGAACTGCTCCTGGACCAGTAGTAGGTTGGCCACCAATTCGTTCATTCAGGAAGAATCTTGCAACTAGCAGCAGTTCTAAGCCATCACCACCAGAATCTCAGACTCAACAGCACATGCACAACAATGTTGCTGCTGGTAAAAAACCTATTGACAACAACTATGGTAAAGGTTTGTTTGTTAAGATCAACATGGATGGTGTTCCAATTGGTAGAAAAGTTGATCTCAATGCTTATCATAGCTATCAAAATCTTTCTTCAGCTGTGGATGAGCTCTTTAGAGGACTCCTTAAAGCTCAACGAGATTCCTCTGCTTGTGGAGGTAACAAGAAAGATGAGGAAGAGAAAGTGATTACTGGATTATTGGATGGAAGTGGAGAGTATACTCTTGTATATGAGGATAATGAAGGTGACAGGATGCTTGTTGGTGATGTCCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTTCGAGTGTTGAAGAGTACAGAGCTTTCTGCTTTTACACTTGGTAATAAGCAAGACAAGATATCTACTTGA 807 0.404 MNEMSRNERESSEERKLELRLGPPGVEDWLHTNNKQRLSFGNYFSSSNNGFQHVRGNKESSSSQTCCPKRVELQNGDNNKVTAVSNTSQKRTAPGPVVGWPPIRSFRKNLATSSSSKPSPPESQTQQHMHNNVAAGKKPIDNNYGKGLFVKINMDGVPIGRKVDLNAYHSYQNLSSAVDELFRGLLKAQRDSSACGGNKKDEEEKVITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSTELSAFTLGNKQDKIST 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04154 268 MobiDBLite consensus disorder prediction 77 93 - -
Mepo6g04154 268 MobiDBLite consensus disorder prediction 77 103 - -
Mepo6g04154 268 MobiDBLite consensus disorder prediction 1 20 - -
Mepo6g04154 268 MobiDBLite consensus disorder prediction 51 70 - -
Mepo6g04154 268 MobiDBLite consensus disorder prediction 109 128 - -
Mepo6g04154 268 FunFam Auxin-responsive protein 142 263 - -
Mepo6g04154 268 ProSiteProfiles PB1 domain profile. 147 251 IPR000270 GO:0005515
Mepo6g04154 268 SUPERFAMILY CAD & PB1 domains 138 248 - -
Mepo6g04154 268 Gene3D - 142 262 - -
Mepo6g04154 268 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 254 IPR003311 GO:0005634|GO:0006355
Mepo6g04154 268 Pfam AUX/IAA family 17 255 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04154 Mepo-Chr6 53634761 53638975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04154 151 262 B3 DNA Binding Superfamily AT4G23980 34.821 5.15e-15 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Mepo6g04154 AUX_IAA 8.5e-70 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04154 K14484 - gmx:100804593 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g04359 1 51234104 51237780 Mepo6g04154 6 53634761 53638975 ECH
Mepo6g04154 6 53634761 53638975 Mepo6g04154 6 53634761 53638975 ECH
Mepo6g04154 6 53634761 53638975 Mepo1g04359 1 51234104 51237780 PCT