Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04150 ATGGTTAGTTGTTTCGCTGACATTTTGTGCAGGATTTATAGCCATGTATGCAACTCTTGTCAGCCGAGCTGTGGATTGATTCCAGAGTCACCCTTTTACCTTGAAGGACCAGGTGGGCTATTGGAGCCATCCTCATCCACCGCCGCTGAAAATGAAGGAGGTCCGGCGCCGTTTGTTCAGAAGACGTATGACATGGTGGATGATTCCGCGACGGACGATATCGTCTCATGGAGCTCTTCCAACAACAGCTTTGTGGTTTGGAACCCTCCGGAATTCGCTTACGTTCTCCTTCCAACCTATTTTGAACACAACAATTTTTCCAGCTTCATCCATCAGCTTGATACCTATGGATTTCGAAAAATTGATTCAGAACATTGCGAGTTTGCTAATGAAGAATTTATAAAAGATCAAAAACATCTCCTGAAGAATATACACTGTAGGAAACCTATCCACAGTCATAGTCATCCTCTGGGTTCTGCTGTTGATCCAGAAAGGGCAGCTTTAGAGGAAGAAATAGAGAAGCTTTCCCAACAGAAAAATTTGCTCGAGTCCAGGTTATTAAACGCCACGGTTGATGTTGAATCAACACAGTTTCAGCTGGATGTTTTCGAGCAGCTACTGGATAGCATGGAGAAGAGGCAGACAAGTTTGTCAAACTTCTTTGAGAAGGCTCTTCAGAATCCTACTTTACTTGATCATGTTAGGCGCAATGTCGAATCCATGGATGCGGCGGCATATAATAGCTTGATTGCCAATCATTACAATTTCCTTATGGAATTTGAAAATGCTTTCCATCAAGAATTTTTGAATAAACTTAGACTGGAATTGTCACCATCTATCTCAGATATGAACTTTGTATCAGGTAGCACACATGTTTCAAATGAAGATGAGGAAAGCTTGCAGAAACATTTGTCTGAAGGAGAACTGACAGAAATGCAGACAAGAACTGAAAGACCAGGCTGTTCAGAAAATGAAGAGGCAATATCCTACTATCAAGCAAATCCAAGACATAGTTGA 1017 0.4179 MVSCFADILCRIYSHVCNSCQPSCGLIPESPFYLEGPGGLLEPSSSTAAENEGGPAPFVQKTYDMVDDSATDDIVSWSSSNNSFVVWNPPEFAYVLLPTYFEHNNFSSFIHQLDTYGFRKIDSEHCEFANEEFIKDQKHLLKNIHCRKPIHSHSHPLGSAVDPERAALEEEIEKLSQQKNLLESRLLNATVDVESTQFQLDVFEQLLDSMEKRQTSLSNFFEKALQNPTLLDHVRRNVESMDAAAYNSLIANHYNFLMEFENAFHQEFLNKLRLELSPSISDMNFVSGSTHVSNEDEESLQKHLSEGELTEMQTRTERPGCSENEEAISYYQANPRHS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04150 338 PRINTS Heat shock factor (HSF) domain signature 109 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo6g04150 338 PRINTS Heat shock factor (HSF) domain signature 58 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo6g04150 338 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo6g04150 338 FunFam Heat shock transcription factor 1 51 148 - -
Mepo6g04150 338 Coils Coil 165 192 - -
Mepo6g04150 338 MobiDBLite consensus disorder prediction 289 338 - -
Mepo6g04150 338 Gene3D - 51 148 IPR036388 -
Mepo6g04150 338 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 49 277 IPR027725 -
Mepo6g04150 338 MobiDBLite consensus disorder prediction 295 322 - -
Mepo6g04150 338 SMART hsfneu3 54 147 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo6g04150 338 Pfam HSF-type DNA-binding 58 145 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo6g04150 338 SUPERFAMILY "Winged helix" DNA-binding domain 54 145 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04150 Mepo-Chr6 53582451 53585619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04150 58 317 HSF AT4G13980 51.079 8.74e-87 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mepo6g04150 HSF_DNA-bind 2.3e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04150 K09419 - gmx:100786408 347.051