Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04137 ATGGATTGTCTTAGTTGGGATGATGACTCACAACTTGTTACCAACATACCAATCTTGTGGAACACTCAACCACAAGACTTTGCAAAAGACTATTCGATGTCCAACCCAAGTTCAAGTGTTTTTAACTATCAAATGCAAGAAATGCAGAAGGTTCAATCAGGAGCTGGAAACAGTTGGGAAGAAACTTTAATATTCCAATCATACCCTTCACTTTCGGTCAATATCGATCCACCTAACAATTATGTGCCACTGCCTGATTTCAACATGGCCCACCAACCAATCAGCAAAAGTACTACTACATGCTCACTTGAATCATCACTTGATTGTTTGCTTTCAGCCACTACTAACAGTAACACTGACACTAATTCTGTTCAAGATGATGGAATTTCCATGATTTTTTCTGACTGCAAAAACAGAAACTTATGGAACTTTAGTGCAGTTTCCTCTGGTGAATCTGAGAGTACTAATGCTAGAAACAAAGAAATGCAGTATGGATTCAAGGAGCTAGATCAAGAAACAGTATCTCCAGCTTCCTCAGATCAAGGTAAAATCATTGATAATTCCAAGGTTCATACCACAAAAAGGACTAATATTGATCAATATGATCCTTGCTTCAGCATTACTACTCAGAATTCTTCTTCTTCTACTGAATTTGGTTTCAAGCTTATCTCAGAGAAACCACCAAAGTCAAAGAAACCAAGATGGGATAATAAGTGTCCTGGTTCATCAAATATCAATTTCCAGCAACCAAATTCATCAGTTTCATTGTCAAATTCATCCTTTGAAGAGCCTGATCCAGAGGCAATAGCACAAATGAAGGAAATGATATATAGAGCTGCAGCATTTAGGCCGGTAACGAATTTGGGTTTGGAAGTGATGGAAAAGCCTAAAAGGAAGAATGTTAAGATATCAAATGATCCACAAACTGTGGCGGCTAGGCAAAGAAGGGAAAGAATAAGTGAGAGGATTAGAGTCTTGCAGAAGATTGTTCCTGGTGGAACCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCTAATTACCTCAAGTTTCTTAGAGCACAAGTTAAAGAACTGGAGAATCTAGGAAACAAGATTGATACAATGAATAATGGTCCTCCTACAAACATAGCCTTCTCCTTCAACCCATCAATTCCCATGCAAAACCCTAATGTCAACATCCAATATTCCCATGATTGA 1200 0.3833 MDCLSWDDDSQLVTNIPILWNTQPQDFAKDYSMSNPSSSVFNYQMQEMQKVQSGAGNSWEETLIFQSYPSLSVNIDPPNNYVPLPDFNMAHQPISKSTTTCSLESSLDCLLSATTNSNTDTNSVQDDGISMIFSDCKNRNLWNFSAVSSGESESTNARNKEMQYGFKELDQETVSPASSDQGKIIDNSKVHTTKRTNIDQYDPCFSITTQNSSSSTEFGFKLISEKPPKSKKPRWDNKCPGSSNINFQQPNSSVSLSNSSFEEPDPEAIAQMKEMIYRAAAFRPVTNLGLEVMEKPKRKNVKISNDPQTVAARQRRERISERIRVLQKIVPGGTKMDTASMLDEAANYLKFLRAQVKELENLGNKIDTMNNGPPTNIAFSFNPSIPMQNPNVNIQYSHD 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04137 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 303 352 IPR011598 GO:0046983
Mepo6g04137 399 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 115 393 IPR045843 GO:0003700|GO:0006355
Mepo6g04137 399 SMART finulus 309 358 IPR011598 GO:0046983
Mepo6g04137 399 MobiDBLite consensus disorder prediction 241 262 - -
Mepo6g04137 399 FunFam BHLH transcription factor 306 370 - -
Mepo6g04137 399 Coils Coil 342 362 - -
Mepo6g04137 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 363 IPR036638 GO:0046983
Mepo6g04137 399 Gene3D - 308 371 IPR036638 GO:0046983
Mepo6g04137 399 Pfam Helix-loop-helix DNA-binding domain 313 352 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04137 Mepo-Chr6 53489887 53491236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04137 105 391 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 55.822 1.69e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo6g04137 HLH 5.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04137 - - gmx:100793830 407.142