Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04121 ATGGGAATGGACAACGAAGAAGATCCTCCTGAACCCCCAACCAAAAGACACAAATGCTCGGCATGCTATAAGCAATATAAGAAGAAAGAACATCTTGTTGAGCACATGAAAAACTCTTACCACTCTATCCATCAACCTAAATGTGTGGTTTGTGGAAAGCATTGCAAATCTTTTGAATCTCTGAGGGAGCATCTAATCGGCCCTTTGGCTAAAGGACTTTGTTCAGCGATTTTCTCTCAGTACGGTTGTCAACTTTGTTTTACCCGATTTGACAGTCCCGCTTCTCTCAATGACCATAAAGAAACTTGTCGCCTAGCTGCCCCTGTTCCTCTAGGGACAAACAAATTTCCTTGTACAGACATCCATATTAAATTTCTGGATTCTTCTGATGAAAATGATGCTGACTGCCGCCCGAAAGCAATTGCTATGGACTGTGAAATGGTTGGTGGTGGAAGTGATGGATCACTGGAACTTTGTGCTAGAGTGTGTTTAGTTGATGAAGATGAGAACTTAATCTTCCACACATATGTAAAACCTCAAATCCCTGTTACTAATTACAGGTATGATATAACTGGGTTGAGAGAAGAGCATCTTCGAGATGGTAAGCCACTTAAGGAAGTTCAGGAAAAGATTTTGCAAATTTTATACAATGGAGAATCCATTGGAAAAGTTAGGTTGGATGGTGGAAAGGCCAGGCTTCTTGTAGGGCATGATTTGGCACATGATTTGGATTGCTTGGGAATGAGTTATCCTGATCACTTGATGAGAGACACAGCAAAGTACCGTCCATTGATGAAGACAAACTTGACCAGCCATTCGCTCAAGTATCTTACCCGAACATATCTAGGCTATGATATCCAAACCGGCGCTCACAATCCATATGAAGATTGTATTTCCGTGATGAGACTGTACAAGAGAATACGAGGTCAAAGTCACAAGGAAAAAGGCTACAGAACATTGACTCCGAGGGACAACATCGTGGACATGTGCGACAGTTGGAGAACCAAGGAACTAGACAACCTCACACCAGATGAACTCTATGCCATCTCAAAATCAGATTATAGGTGTTGGTGTTTGGATTTGAAGCCAAGATTGGCGCAAGCTTGA 1107 0.421 MGMDNEEDPPEPPTKRHKCSACYKQYKKKEHLVEHMKNSYHSIHQPKCVVCGKHCKSFESLREHLIGPLAKGLCSAIFSQYGCQLCFTRFDSPASLNDHKETCRLAAPVPLGTNKFPCTDIHIKFLDSSDENDADCRPKAIAMDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVKPQIPVTNYRYDITGLREEHLRDGKPLKEVQEKILQILYNGESIGKVRLDGGKARLLVGHDLAHDLDCLGMSYPDHLMRDTAKYRPLMKTNLTSHSLKYLTRTYLGYDIQTGAHNPYEDCISVMRLYKRIRGQSHKEKGYRTLTPRDNIVDMCDSWRTKELDNLTPDELYAISKSDYRCWCLDLKPRLAQA 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04121 368 ProSitePatterns Zinc finger C2H2 type domain signature. 19 41 IPR013087 -
Mepo6g04121 368 SMART c2h2final6 17 41 IPR013087 -
Mepo6g04121 368 SMART c2h2final6 81 101 IPR013087 -
Mepo6g04121 368 SMART c2h2final6 46 66 IPR013087 -
Mepo6g04121 368 CDD REX4_like 141 305 IPR037431 GO:0006364|GO:0008408
Mepo6g04121 368 Gene3D - 136 323 IPR036397 GO:0003676
Mepo6g04121 368 SUPERFAMILY Ribonuclease H-like 140 310 IPR012337 -
Mepo6g04121 368 SMART exoiiiendus 139 313 IPR013520 -
Mepo6g04121 368 Pfam Exonuclease 141 304 IPR013520 -
Mepo6g04121 368 Gene3D Classic Zinc Finger 3 67 - -
Mepo6g04121 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 17 46 IPR013087 -
Mepo6g04121 368 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 20 315 IPR047021 GO:0004527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04121 Mepo-Chr6 53353958 53356775 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04121 3 360 C2H2 Transcription Factor Family AT3G27970 52.793 2.56e-135 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04121 K18327 - gmx:100805841 581.637