Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04116 ATGAGTCGTTACGATAGTCGTTCCTCCGACCCCACTTCCTACCGCGACCGTAGAAGTGACTCTGCTCTAGGTGCTGCACCTTCAACCAAAAATGAAACTGCCTCTGCCTCTGCCTCACCTGCCAGGAAGATTAATTTGGATGGATTACCTCATTTTGAGAAAAATTTCTACTCCGAATCTCCTTCCGTTCGTTCTATGACTGAACCTGAAGTTACTGAGTATCGTCTTCGCCGTGAAATTACTGTTGAAGGCAAAGATGTTCCTAAACCTGTTAAATCCTTTTCCGATGCTGCTTTTCCAGACTATGTGTTAGAAGAAGTAAAAAAAGCTGGCTTTGTTGAACCTACACCCATTCAGTCCCAAGGTTGGCCAATGGCTTTGAAGGGACGTGATCTAATAGGAATTGCAGAGACGGGATCAGGGAAGACACTTGCTTACTTGTTGCCTGCTATAGTGCATGTTAATGCCCAGCCAATTCTAGATCCTGGCGATGGACCTATTGTCTTAGTTTTGGCCCCGACACGTGAACTTGCCGTCCAAATACAACAAGAAGCTACTAAATTTGGTGCGTCGTCAAGGATTAAGAGCACATGCATTTACGGTGGGGTTCCCAAGGGGCCTCAAGTGCGCGATCTTCAGAAAGGCGTTGAAATTGTAATTGCCACTCCGGGAAGGTTAATTGATATGATCGAGTCAAATCATACTAACTTGCGAAGGGTCACATACCTGGTATTGGATGAAGCTGACAGAATGTTGGACATGGGGTTTGATCCCCAGATACGGAAAATTGTCTCTCAGATTCGGCCAGACCGACAAACTTTGTACTGGAGTGCTACTTGGCCAAAGGAGGTCGAACAATTGGCAAGGCAGTTCCTTTATAATCCATACAAAGTGATTATAGGTTCCGAAGATTTAAAAGCTAACCATGCTATAAAGCAATACGTTGACATTGTTCCTGAGAAGCAAAAATATGATAAATTGGTGAAGTTGTTGGAGGACATCATGGATGGAAGCCGAATATTGATATTCATGGACACTAAAAAGGGATGTGATCAGATTACTAGGCAGCTACGCATGGATGGTTGGCCTGCACTTTCAATTCATGGAGACAAAAGTCAAGCAGAAAGAGATTGGGTGCTTTCAGAGTTTAAATCTGGAAAGAGTCCTATAATGACTGCAACAGATGTTGCAGCTCGTGGTTTAGATGTGAAGGATGTGAAGTACGTGATAAATTATGACTTCCCGGGATCACTAGAGGATTATGTTCACCGCATTGGAAGGACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTTACAGCAGCTAATGCCAGATTTGCAAAGGAGCTTATTAGCATACTTGAGGAAGCTGGACAGAGAGTGAGTTCTGAATTGGCAGCAATGGGGCGTGGCGCACCTCCTCCACCTTCAGGAGGCTTCCGAGACCGAGGCAAGAGTTTTGGCAGTGGTCGCCCGTGGAGCTAA 1491 0.4514 MSRYDSRSSDPTSYRDRRSDSALGAAPSTKNETASASASPARKINLDGLPHFEKNFYSESPSVRSMTEPEVTEYRLRREITVEGKDVPKPVKSFSDAAFPDYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELISILEEAGQRVSSELAAMGRGAPPPPSGGFRDRGKSFGSGRPWS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04116 496 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 123 298 IPR014001 -
Mepo6g04116 496 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 244 252 IPR000629 -
Mepo6g04116 496 Gene3D - 55 302 IPR027417 -
Mepo6g04116 496 SMART helicmild6 351 432 IPR001650 -
Mepo6g04116 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 448 IPR027417 -
Mepo6g04116 496 MobiDBLite consensus disorder prediction 1 17 - -
Mepo6g04116 496 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 471 IPR001650 -
Mepo6g04116 496 CDD SF2_C_DEAD 311 441 - -
Mepo6g04116 496 Gene3D - 304 470 IPR027417 -
Mepo6g04116 496 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 44 470 - -
Mepo6g04116 496 SMART ultradead3 111 314 IPR014001 -
Mepo6g04116 496 MobiDBLite consensus disorder prediction 1 44 - -
Mepo6g04116 496 FunFam ATP-dependent RNA helicase RhlB 302 474 - -
Mepo6g04116 496 Pfam DEAD/DEAH box helicase 116 287 IPR011545 GO:0003676|GO:0005524
Mepo6g04116 496 CDD DEADc_DDX5_DDX17 103 298 - -
Mepo6g04116 496 MobiDBLite consensus disorder prediction 468 496 - -
Mepo6g04116 496 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 92 120 IPR014014 GO:0003724
Mepo6g04116 496 MobiDBLite consensus disorder prediction 24 40 - -
Mepo6g04116 496 Pfam Helicase conserved C-terminal domain 323 432 IPR001650 -
Mepo6g04116 496 FunFam probable ATP-dependent RNA helicase DDX17 54 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04116 Mepo-Chr6 53324176 53329409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04116 79 470 Eukaryotic Initiation Factors Gene Family AT3G19760 34.606 9.38e-78 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04116 K12823 - gmx:100790464 881.322