Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04084 ATGGGGCATCACTCTTGCTGCAACAAACAGAAGGTGAAAAGAGGACTATGGTCACCAGAAGAAGATGAAAAACTCATCAACTACATCACTAATTATGGACATGGTTGTTGGAGTTCTGTCCCTAAACTTGCAGGACTGCAGAGATGTGGAAAAAGTTGCAGGTTGAGATGGATAAATTATTTAAGACCTGATTTGAAACGTGGAAGTTTTTCTCCACAAGAAGCTGCTCTCATTATTGAACTTCATACCATTCTAGGCAACAGGTGGGCTCAGATAGCAAAGCATTTACCAGGAAGAACAGATAATGAGGTGAAGAACTTTTGGAATTCAAGCATAAAGAAGAAACTACTTTCACATGATTTTGTTCCCACTTCTTTAGCCACATTTTCTGATATTCACTGTCCTAGAAATGGTTCTGTTGAAAGTTTCTTCCCTTTATTTAATGACAATCCTATCCTTAACTCCAATCATCAATATCACTTTGATAACCACCTATACCTTCCAATCAATATCCCAACTCCAATCCTACAAGGTATTGATCAAAATGATATCAAAAATATTGATACCAACAGTTATAATCCCAATTTCCTACATGTTCAGAATAATCCAATATTGCCTGAAACAGTTCCATCATCAAATATTCCATCTTCTTATGAATTAGATACATGGTCATTAATTCATCATCTCAATCCAAATATTCAAGAAAATCATCAAATTACCACCAAAAATGATGCTGCCACCCAAAACTATAATATTGTTGATCAGAATTTTATCAATATGCCAAATACATGGCAGCAGCAGCAGCACTATGATAGTAATAGTCATTTAGTGAATCACCTTGAACCTATTGTCCAAAAAGTCTTTGAAAGTGAAACCATTAAGGATAATTATGTTTGTGGCGTCCCATTTTCTTCTTCTGCTTCTTCACAAGAACATGATCATCATCATCATGATGTTGTCAACCAAATTGCTGATCAGTGTTATAATACAGATCACTATCAAGGTGCTATAATTTGTCCAAAACAAGATCATCATCAAATTGTTGCTGCACCAAAGAATGATCATCAAATGGAGTATAACATTGAAGCTCTCATCATGTCATCATTGCCATCCTCAACAACGACATCTTCTTCATCACCACTATCATTCTATCAACCAGTTACTCTCACAAAACCTATCCTTCCTTAA 1188 0.3561 MGHHSCCNKQKVKRGLWSPEEDEKLINYITNYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHTILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDFVPTSLATFSDIHCPRNGSVESFFPLFNDNPILNSNHQYHFDNHLYLPINIPTPILQGIDQNDIKNIDTNSYNPNFLHVQNNPILPETVPSSNIPSSYELDTWSLIHHLNPNIQENHQITTKNDAATQNYNIVDQNFINMPNTWQQQQHYDSNSHLVNHLEPIVQKVFESETIKDNYVCGVPFSSSASSQEHDHHHHDVVNQIADQCYNTDHYQGAIICPKQDHHQIVAAPKNDHQMEYNIEALIMSSLPSSTTTSSSSPLSFYQPVTLTKPILP 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04084 395 Gene3D - 11 67 - -
Mepo6g04084 395 PANTHER MYB DOMAIN PROTEIN 55 1 304 - -
Mepo6g04084 395 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mepo6g04084 395 FunFam Myb transcription factor 69 116 - -
Mepo6g04084 395 FunFam MYB transcription factor 6 66 - -
Mepo6g04084 395 CDD SANT 17 61 IPR001005 -
Mepo6g04084 395 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mepo6g04084 395 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Mepo6g04084 395 SMART sant 13 63 IPR001005 -
Mepo6g04084 395 SMART sant 66 114 IPR001005 -
Mepo6g04084 395 Gene3D - 69 116 - -
Mepo6g04084 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mepo6g04084 395 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mepo6g04084 395 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mepo6g04084 395 CDD SANT 69 109 IPR001005 -
Mepo6g04084 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04084 Mepo-Chr6 53050987 53052605 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04084 1 195 MYB Transcription Factor Family AT3G13890 66.184 2.21e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo6g04084 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04084 K09422 - gmx:102662609 422.55