Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04079 ATGGAACCTCGTATTGGTAACAAGTTTCGTCTTGGCCGCAAAATTGGTAGCGGATCCTTCGGCGAGATCTATCTCGGTACAAATATTCAGACAAATGAAGAGGTTGCAATTAAGCTTGAAAATATCAAAACCAAGCATCCTCAGTTGTTGTACGAATCAAAGTTGTATAAAGTACTTCAAGGCGGAACTGGTATCCCGAATGTGAGATGGTTTGGCGTAGAAGGAGAGTACAATGTTCTTGTAATGGATTTACTGGGACCAAGTCTTGAGGATTTATTCAGTTTTTGTAGTCGGAAATTGTCCCTTAAAACTGTACTCATGCTTGCTGATCAGATGATAAATCGAGTTGAATATATTCATTCCAAATCATTTTTACACAGGGACATCAAGCCAGACAACTTCCTCATGGGTCTGGGGAGGCGAGCTAATCAAGTGTATGCCATTGACTTCGGTCTTGCTAAAAAATACAGGGACACCTCTACCCATCAGCATATACCTTACAGAGAGAATAAGAACTTGACAGGAACTGCTAGATATGCTAGTATGAATACACATCTTGGAATTGAGCAAAGCCGTAGGGACGACTTAGAATCACTTGGATACGTTCTTATGTACTTTCTGAGAGGAAGCCTTCCATGGCAAGGGTTAAAAGCAGGTACTAAAAAGCAGAAGTACGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCCTTGTGTCGTGGCTACCCCTCAGAATTTGCTTCATACTTCCATTACTGTCGGTCATTGCGGTTTGATGATAAACCAGATTATGCATATCTGAAAAGGCTGTTTCGCGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTCGATTGGACCATTTTGAAGTATCAGCAATCTCAAATTGCCACTCCTTCTGCACGTGCCATTGGTTCTGGTGCTGGGCCAAGTTCTGGCATACCACCAGCTGTTGTGAGTGCTGAGAGACCGTCAGGTGGGGAAGATGGTAGACATGCTGGTTGGTCTTCATCAGATCCTGCTCGTAGAAGAACCTCTGGACCTATTGCAAATGATGGAAACTTGTCTAGACAAAAAGCCCCGGTACCAAGTGACTCAAATGGATCTAAAGAAGTTATGTTGTCTAGTTCTAATTTCTTCCGGCCTAGTGGATCTACAAGACGAGTAGGTGCTGTTTCCAACAGTCGTGATGCAGTTGTTGGCAGTGAAATTGAACCCTCTCTTCCTCTTGCCAGGGATGGTAGTCCTGGAGCACTCCTTAAAACCTCTGGTGCTCAAAGAAATTCACCTATCACATCATCAGAGCACAAAGCAACAACATCTTCTGGCAGAAACACATCGAACATGAAGAATTTTGAATCAACTATCCGAGGTATTGAGAGCCTGAATTTCAATGACGAGAAGGTACAGTATTAG 1428 0.4258 MEPRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENIKTKHPQLLYESKLYKVLQGGTGIPNVRWFGVEGEYNVLVMDLLGPSLEDLFSFCSRKLSLKTVLMLADQMINRVEYIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPSARAIGSGAGPSSGIPPAVVSAERPSGGEDGRHAGWSSSDPARRRTSGPIANDGNLSRQKAPVPSDSNGSKEVMLSSSNFFRPSGSTRRVGAVSNSRDAVVGSEIEPSLPLARDGSPGALLKTSGAQRNSPITSSEHKATTSSGRNTSNMKNFESTIRGIESLNFNDEKVQY 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04079 475 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Mepo6g04079 475 CDD STKc_CK1_delta_epsilon 8 282 - -
Mepo6g04079 475 MobiDBLite consensus disorder prediction 306 455 - -
Mepo6g04079 475 FunFam Putative Casein kinase I 1 85 - -
Mepo6g04079 475 MobiDBLite consensus disorder prediction 343 396 - -
Mepo6g04079 475 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo6g04079 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Mepo6g04079 475 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo6g04079 475 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Mepo6g04079 475 FunFam Casein kinase I isoform delta-like 1 308 - -
Mepo6g04079 475 Gene3D Transferase(Phosphotransferase) domain 1 1 309 - -
Mepo6g04079 475 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo6g04079 475 MobiDBLite consensus disorder prediction 425 455 - -
Mepo6g04079 475 PANTHER CASEIN KINASE-RELATED 13 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04079 Mepo-Chr6 53000243 53005762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04079 7 223 EF-hand Containing Proteins AT2G17890 26.667 9.92e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Mepo6g04079 Pkinase 4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04079 K02218 - gmx:100778165 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g04079 6 53000243 53005762 Mepo1g04228 1 49567418 49572844 PCT