Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04077 ATGTGTTTTCTTGGAGTGGTATTTGGGGATGTCTTTTTTTTTTTTATGGTTTTATTTTTGTTGAAAATGTTTTTTTTTTGTGATATATCTGTTGAATTTTATCTGAAGTATGTTTTTTTTTGTTCTGTAGTCATGGCAGGTTTAGCTCCAGAAGGTTCACAATTTGATACCAAGCAGTTCGACACTAAGATGAATGAATTGCTTTCCACTGAAGCACAAGAATTCTTCACGTCATACGATGAAGTCCATGAAACTTTTGATGCAATGGGATTGCAAGAAAATCTTCTGAGAGGCATATATGCTTATGGTTTTGAGAAGCCATCTGCAATACAGCAAAGGGGAATTGTCCCTTTCATCAAGGGTCTAGATGTGATCCAGCAGGCTCAGTCAGGAACTGGAAAAACAGCGACATTCTGTTCTGGAATTTTGCAGCAGCTTGATTATGGTTTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTGGCACAGCAGATTGAGAAGGTTATGAGAGCACTTGGTGATTACCTTGGTGTTAAGGTTCATGCTTGTGTTGGTGGCACTAGTGTTCGTGAGGATCAGCGTATTCTCCAAACTGGTGTCCATGTTGTTGTTGGCACTCCTGGACGTGTGTTTGACATGCTGCGAAGACAGTCTCTTCGGTCAGATTGCATTAAAATGTTTGTTTTGGATGAAGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGATCTACGACATCTTCCAGTTGCTGCCACCCAAAATCCAGGTTGGAGTGTTCTCCGCTACAATGCCCCCAGAAGCTCTGGAGATCACAAGGAAGTTCATGAATAAGCCAGTGAGAATTCTGGTAAAGCGTGATGAATTGACCCTTGAGGGTATCAAGCAGTTTTATGTGAATGTTGACAAAGAAGAGTGGAAACTAGAGACATTGTGTGACCTTTATGAGACTCTGGCTATCACTCAGAGTGTCATTTTTGTGAACACAAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAGGCCGAGACCATACTGTCTCAGCCACCCATGGAGACATGGACCAAAACACTCGTGATATCATCATGCGTGAATTCCGCTCTGGCTCTTCTCGAGTTCTCATTACCACTGACCTTTTGGCCCGTGGTATTGATGTTCAGCAAGTGTCTCTGGTCATAAATTATGATTTGCCTACCCAACCTGAAAACTATCTCCATCGTATTGGGCGAAGTGGGCGTTTCGGAAGAAAAGGTGTTGCTATCAACTTTGTCACATTGGAAGATGCAAGAATGCTGGCTGATATTCAGAAGTTCTATAATGTGATCGTAGAGGAATTGCCTTCAAATGTTGCTGATCTACTCTGA 1374 0.4287 MCFLGVVFGDVFFFFMVLFLLKMFFFCDISVEFYLKYVFFCSVVMAGLAPEGSQFDTKQFDTKMNELLSTEAQEFFTSYDEVHETFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQTGVHVVVGTPGRVFDMLRRQSLRSDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLEDARMLADIQKFYNVIVEELPSNVADLL 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04077 457 Pfam DEAD/DEAH box helicase 109 270 IPR011545 GO:0003676|GO:0005524
Mepo6g04077 457 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 296 457 IPR001650 -
Mepo6g04077 457 Pfam Helicase conserved C-terminal domain 310 418 IPR001650 -
Mepo6g04077 457 Gene3D - 74 292 IPR027417 -
Mepo6g04077 457 SMART helicmild6 337 418 IPR001650 -
Mepo6g04077 457 FunFam Eukaryotic initiation factor 4A-II 72 291 - -
Mepo6g04077 457 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 115 285 IPR014001 -
Mepo6g04077 457 CDD DEADc_EIF4A 88 286 - -
Mepo6g04077 457 Gene3D - 293 457 IPR027417 -
Mepo6g04077 457 SMART ultradead3 103 300 IPR014001 -
Mepo6g04077 457 CDD SF2_C_DEAD 297 427 - -
Mepo6g04077 457 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 83 440 - -
Mepo6g04077 457 FunFam Eukaryotic initiation factor 4A-III 292 457 - -
Mepo6g04077 457 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 231 239 IPR000629 -
Mepo6g04077 457 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 84 112 IPR014014 GO:0003724
Mepo6g04077 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 438 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04077 Mepo-Chr6 52989675 52992539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04077 45 457 Eukaryotic Initiation Factors Gene Family AT1G72730 89.372 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04077 K03257 - csin:114262399 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g04077 6 52989675 52992539 Mepo1g04222 1 49520939 49524414 PCT