Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04076 ATGGGAAATCAGAAGCAGAAGTGGACAGCTGAAGAAGAAGAAGCTTTGCATCAAGGTGTTCAGAAATATGGTGCTGGAAAATGGAAGCACATTCTCAAAGACCCTCAATTCAGTCAAAAACTCGCTAGCCGCTCCAATATCGATCTAAAGGACAAATGGCGGAATTTGAATGTTTTTCCTGGTCAAAACCCTAAAACTCCTAAGGGTAAACCATCTGGGTCCTCTCCTGCTCCAAGCAATGCTACTCCTTCTCCGTCTCCTGCTCCTGGTACTCCTGCTGCTTCTGCTGCTTCTGCTGGTACTCCTGCTGCTGCTGCTGCTGCTGCTGCTGTTCCGGTCAATGTTGCTGTTACACCTCAAACTCAGACTCCGATTCAGACTCCTACTCGCCAGCCTTCTCAGAATGATGACAATGCTGCCAAGATTTATCCTCAGTACAATTCATTGGTTTTTGAAGCTCTATCAACAATCAAGGATCCCAATGGTTCTGACTTAAATGCTATTATTAGCTTCATTGAGCAAAAGCACAACTTGCCTCAAAGTCAAAATTTCAGAAGGACACTAGGTGCCAAGTTAAGAAGGCTTGTCAGTCAAGGGAAACTTGAAAAGGTACAAAATGGTTACAAGATAAAGGACACCTCAGTGGGGGTGAAGTCAGCTGATGACTCAAAACCACCTGCACCAAAAGAAATGGACCTGCCAGGGTCATCTAATAATTTTGCATATGATGATGCCATAAAGGAAGCTTCCGAAACTCTAGCCTGCAGACTTGCTGACGCGGAGAATAAGTCATTTTTGGCTACTGCAGCAGTCAGGGAGACAGAAAGATATTCAAAGTTTGGGGAGGAAAATGATGCAATGTTAAAGATTGCAGAAGAGATTTATGCAAAATGTATGCTAGGTGAAACTGTTCGCTTCACTTAA 924 0.4383 MGNQKQKWTAEEEEALHQGVQKYGAGKWKHILKDPQFSQKLASRSNIDLKDKWRNLNVFPGQNPKTPKGKPSGSSPAPSNATPSPSPAPGTPAASAASAGTPAAAAAAAAVPVNVAVTPQTQTPIQTPTRQPSQNDDNAAKIYPQYNSLVFEALSTIKDPNGSDLNAIISFIEQKHNLPQSQNFRRTLGAKLRRLVSQGKLEKVQNGYKIKDTSVGVKSADDSKPPAPKEMDLPGSSNNFAYDDAIKEASETLACRLADAENKSFLATAAVRETERYSKFGEENDAMLKIAEEIYAKCMLGETVRFT 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04076 307 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Mepo6g04076 307 SMART sant 4 59 IPR001005 -
Mepo6g04076 307 Gene3D - 2 58 - -
Mepo6g04076 307 Gene3D - 139 232 IPR036388 -
Mepo6g04076 307 MobiDBLite consensus disorder prediction 216 236 - -
Mepo6g04076 307 SUPERFAMILY "Winged helix" DNA-binding domain 143 212 IPR036390 -
Mepo6g04076 307 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Mepo6g04076 307 CDD SANT_TRF 6 57 - -
Mepo6g04076 307 Pfam linker histone H1 and H5 family 144 207 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo6g04076 307 SMART h15plus2 140 207 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo6g04076 307 MobiDBLite consensus disorder prediction 46 97 - -
Mepo6g04076 307 FunFam Telomere repeat-binding factor 1 2 58 - -
Mepo6g04076 307 PANTHER SINGLE MYB HISTONE 4 1 304 IPR044597 GO:0003691
Mepo6g04076 307 MobiDBLite consensus disorder prediction 59 77 - -
Mepo6g04076 307 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 142 212 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo6g04076 307 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Mepo6g04076 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04076 Mepo-Chr6 52968103 52972939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04076 1 304 Single Myb Histone (SMH) Gene Family AT1G72740 43.087 1.74e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mepo6g04076 Linker_histone 1.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04076 K09422 - gmx:778177 243.432