Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04067 ATGGAAGGTCGAAGTCGCACCGTTGAACAAATTTTTGATGATTTCAAGAGCCGAAGAACTGGAATCATCAAAGCCCTAACCGTCGATGTTGAAGATTTTTACCGACAATGTGATCCTGAAAAGGAGAATTTGTGCTTGTATGGATTGCTTAATGAGAATTGGGAAGTGAATTTACCTGTTGAAGAAGTTCCTCCAGAGATTCCTGAGCCTGTGCTGGGCATCAACTTTGCCAGGGATGGAATGCAAGAGAAAGACTGGTTAGCCTTAGTTGCTGTTCACAGTGATACATGGTTACTTTCCCTTGCATTCTACTTTGGAGCCAGATTTGGATTTGATAAAGCTGACAGGAAACGTCTATTCAATTTGATCAATGAACTGCCAACGGTATTTGAAGTTGTTACTGGTGCTGCAAAGAAACAAGTCAAAGAGAAGTCTTCAGTCTCAAACAACAGTGGCAGCAAATCTAAGTCCAGTTCTAAAGCGCGGGCTCCTGAAGCTCAGAGCAGACAACCAAAAGCGGCATTACTGCCAAAAGATGAGGAGGAAGAACTGGAAGAGCAGGATGATGATGAACAGGGAGAAGCCACTTGCGGGGCTTGTGGTGATAGTAATGGGGCTGATGAGTTCTGGATTTGCTGCGACATCTGCGAGAAGTGGTTCCATGGAAAATGTGTGAAGATCACTCCTGCTCGTGCCGAGCATATCAAGCAATACAAGTGCCCATCATGCAGCAGTAACAAGAGAGCTCGCTAG 753 0.4489 MEGRSRTVEQIFDDFKSRRTGIIKALTVDVEDFYRQCDPEKENLCLYGLLNENWEVNLPVEEVPPEIPEPVLGINFARDGMQEKDWLALVAVHSDTWLLSLAFYFGARFGFDKADRKRLFNLINELPTVFEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPEAQSRQPKAALLPKDEEEELEEQDDDEQGEATCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04067 250 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Mepo6g04067 250 ProSitePatterns Zinc finger PHD-type signature. 197 243 IPR019786 -
Mepo6g04067 250 SUPERFAMILY FYVE/PHD zinc finger 186 246 IPR011011 -
Mepo6g04067 250 SMART PHD_3 196 244 IPR001965 -
Mepo6g04067 250 PANTHER CPG BINDING PROTEIN 5 249 IPR045104 GO:0006355|GO:0042393
Mepo6g04067 250 MobiDBLite consensus disorder prediction 141 165 - -
Mepo6g04067 250 FunFam PHD finger alfin-like protein 189 245 - -
Mepo6g04067 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 245 IPR013083 -
Mepo6g04067 250 MobiDBLite consensus disorder prediction 141 193 - -
Mepo6g04067 250 Pfam PHD-finger 197 245 IPR019787 -
Mepo6g04067 250 ProSiteProfiles Zinc finger PHD-type profile. 194 246 IPR019787 -
Mepo6g04067 250 CDD PHD_AL_plant 197 246 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04067 Mepo-Chr6 52906989 52911606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04067 6 250 Alfin-like Transcription Factor Family AT3G42790 72.245 4.28e-118 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mepo6g04067 Alfin 5.5e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04067 K26274 - gmx:100170700 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g04187 1 48796605 48800905 Mepo6g04067 6 52906989 52911606 ECH
Mepo6g04067 6 52906989 52911606 Mepo6g04067 6 52906989 52911606 ECH
Mepo6g04067 6 52906989 52911606 Mepo1g04187 1 48796605 48800905 PCT