Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04066 ATGAAGTGCTTATGTGAGAAAGACTCTGCTCATGTTTTTGGATGTCCATCACACCAAACATCCATGTCCAAAAGTTTGAGCTTCAAAGTGGAAGATCTGCCACAAGAATGCCACAACAGTAAAGCACTGAGTTTTCAATTTCAAGAACAGGATTCATCTTCAACTCAATCAACTGGCTCATCACAATCAGGTCAAATTCCTTTCCAGCATTGTTCTTCTACTGGTTCAACATTTAAGAGAACCGAAGAGAACAATATGGGATGTCTCCTCGGGTCATCATCTATTGGGAGTCCAAATCTGGCCGTCCATCCTCCACCTGTGGATCACAGCCAATCACTTGCGCATGTTGCACTCCACTTTGCTGATCCATGCTACAATGGCCTACTTTCTGCTTCATATGGCCAACAATATAAGGCTTATAGCATCATGTCATCAAATTATGACCAGCTTCTTCAGGGCCAGCTAATGGAAACTGCTTCTGTCCGAATTCCCTTGCCATCTGACATGGCAGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTATGAGGCGAAGACAGTGTCGGGCAAAACTTGAAGCACATAACAAACTCATTAAGGATCGTAAACCATATCTTCATGAGTCCCGACATGTACATGCATTAAAGAGAGCTAGAGGTGCCGGTGGCCGCTTTCTCAATGCTAAAAAGCTCCAAGAATCAAAGCTTGATTCGTCAAACCATGGCCAAAATGTTTCCACCAGCTATACTTGTTTGAATTTGAATGGAAATATGTCAGAATCTAAAATGCATGATCAGGTTCAAAACTACAGAGACAATGCTCCTGATGTCGCATATGGATCTAACAGGAGTGAAATGTTTCAGCAGCAACAGGAGTTAGAGTTCAGGTTATGCAGTTACCCTTCACCTCAGACTGGAAGGAACATGCAGGATTATACATCTGACAAGAATGTTGGTGCGAATCAACGCCGGCTATCCGTCCGCATGTGA 996 0.4297 MKCLCEKDSAHVFGCPSHQTSMSKSLSFKVEDLPQECHNSKALSFQFQEQDSSSTQSTGSSQSGQIPFQHCSSTGSTFKRTEENNMGCLLGSSSIGSPNLAVHPPPVDHSQSLAHVALHFADPCYNGLLSASYGQQYKAYSIMSSNYDQLLQGQLMETASVRIPLPSDMAEEPIYVNSKQYHAIMRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLNAKKLQESKLDSSNHGQNVSTSYTCLNLNGNMSESKMHDQVQNYRDNAPDVAYGSNRSEMFQQQQELEFRLCSYPSPQTGRNMQDYTSDKNVGANQRRLSVRM 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04066 331 MobiDBLite consensus disorder prediction 306 323 - -
Mepo6g04066 331 PRINTS CCAAT-binding transcription factor subunit B signature 204 227 IPR001289 GO:0003700|GO:0006355
Mepo6g04066 331 PRINTS CCAAT-binding transcription factor subunit B signature 173 195 IPR001289 GO:0003700|GO:0006355
Mepo6g04066 331 ProSiteProfiles NF-YA/HAP2 family profile. 170 230 IPR001289 GO:0003700|GO:0006355
Mepo6g04066 331 Gene3D - 170 231 - -
Mepo6g04066 331 SMART cbf3 169 230 IPR001289 GO:0003700|GO:0006355
Mepo6g04066 331 MobiDBLite consensus disorder prediction 306 331 - -
Mepo6g04066 331 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 172 227 IPR001289 GO:0003700|GO:0006355
Mepo6g04066 331 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 287 IPR001289 GO:0003700|GO:0006355
Mepo6g04066 331 ProSitePatterns NF-YA/HAP2 subunit signature. 175 195 IPR018362 GO:0003677|GO:0016602
Mepo6g04066 331 MobiDBLite consensus disorder prediction 48 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04066 Mepo-Chr6 52902470 52906175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04066 13 331 CCAAT-HAP2 Transcription Factor Family AT1G17590 37.830 5.85e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mepo6g04066 CBFB_NFYA 6.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04066 K08064 - gmx:100500765 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g04066 6 52902470 52906175 Mepo6g04066 6 52902470 52906175 ECH
Mepo6g04066 6 52902470 52906175 Mepo1g04186 1 48779961 48782541 PCT