Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04056 ATGGAATACCCTTTTTATCCTAAGGGAGGAGGAATTGGGTATTGGCAGTCTCCTGGAACTCAGTTCGAAGGGCCAACATCATTAGATGGTGGAATCAACAATTTGGTGTCAGAAGATATGCCTAACAGCTTCTCCGAGCTCATGAACTTTGATACTTATGCTGGTTTTTGTTCTGGCCCATCCATGACTGATCAGATTATGACTAATGAGCTTCCATCTCTTGCCTCAGTATTATATCAATCGTCTGATGGATTCAATCCAGTCGAACAGAACAGTGGACAATTCTATGGTGGAAATTACAATAATTTGGAAAGCTCCCCTATTTTTGGGGAGAAAATTGTGTGTCAGCAAATGGATACCCTACTTGGTGTCTTAGACAACAGCAATGATGCAAATAACTTAAGTTCTAGGCAAAAATTTGACGACCCTTCGCAACATGTCAATGGCTTTGATATGGGCAATTACGTAATCGCCAGGCCACAAGCTTTAATCTCCAGGCCACCTGCTTTGTCACTTGATGAGAGAATGCTGAAAGCCTTGTCCTTCTTTAAAGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTACCCATAAAGCATGATGGTCAGGTACTCTTAAGCACCAGCGAGCAACCTTATTTACTAGATCAAATGCTTGCAGGGTATCGCGAAGTTTCAAGGACATTTAGATTTTCCACAGAAGGAAAACCAGGTTGTATACCGGGTCTTCCTGGCCGTGTGTTCATCTCCAAAGTTCCTGAGTGGACTTCTAATGTTGGTTATTACAATCCAAAGGAGTACTTGAGGGCTGAGCATGCAAGAAATCACGAGGTTCGCGGATCGATTGCTTTTCCCATATTTGATCTGCACTCTGGACTGCCATGTTCTGCTGTCTTGGAACTTGTCACTACAAAGGAAAAGCTTGATTTTGACAGAGAGTTGGAAATCATTTGTCGGTCACTTCAGCTTGTAAATTTAAGGACTACTGTGTCTTCTCGGCTGCTTCCCGAGTGTCTTTCGACCAATAAAAGAGCTGCTTTAACCGAGATAGTGGATGTGTTACGATCTGTGTGTCATGCACATAGATTGCCATTGGCACTAACATGGATTCCCTGTTTTTACACTGACGGCACAAGAGATGAAACTACTAGAATACAAATTAAAGAGGGTAATTCAAGTTCTAGAGAAAAAAACATACTGTGTATTGAAGAGTCAGCTTGCTATATAACTGATAGAGTGATGGAAGGATTTGTGCGTGCATGCATTGAACATCCTCTTGAGGAAGGGAACGGTGTAGCTGGGAAAGCACTTCAATCAAACCATCCTTTCTTCTATTCTGACGTGAAAACATATGATATTAGTGAGTATCCGCTTGTTCATCATGCACGCAAGTTCAATTTGGGTGCTGCAGTTGCAATCAGGCTAAGGAGTATTTATACTAATAATGATGATTACATATTGGAATTCTTTCTTCCTATCAATATGAAAGGGAGTTCAGAACAGCAACTCTTATTAGACAGCCTCTCAGGTACCATGCAGAAAATTTGTAAGAGTTTGAGGACAGTTTCAGGTGCTGAAATATTAGAAACGGAAAGCTCAGTGGTGGGGTTTGGAAAGAAAAATGTCCCAAGTTTCCCCCCCACATCTACGAGGAACTCTCAGATATCATTAATAAATGAAAAGGATGGTTCTGTTCAGAAGCTATCATTGGATGCTTCTAACCTGAGAAACAATGGAAACGAGCCTTCTTGTAATCAGGAAAATAATGGATCGAGAAGGCGAGTTGAGAAAAAAAGAAACACATCAGAGAAGAATGTTAGCTTGAGTGTTCTCCAGCAATACTTTTCTGGTAGTCTGAAGGATGCTGCTAAAAGCATTGGTGTTTGCCCGACAACTCTGAAAAGGATATGCAGGCATCACGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGTTCTTTGAAGAAAATTCAGACTGTGCTGGACTCTGTTCAGGGAGTTGAAGGTGGATTGAAGTTTGATCCTTCCTCAGGAGCATTTGTGGCAGGAGGGACAACCATACAAGAAATCAATGAAAATAAAAGCCGCCTTTTCCCCGAGAGAAGTACTACACAAGACTCTGAGCCTATTTCACAAGATGCTGTCTCGGTTCCTAGTGAAGATGAGAATTCGGAAAATAAGTTGGAAGGAAAATTGAAGGAAACCAATACTTGTTCGATCGATTGCAGTGAAGATTCAAAATCATTTGCAATGGATGATTGTCCTGAACAAGCTTGTATTGGTTCCGTTCTTGCAAAATGTGATGAATGGGTTCTAAACAATGGCGGTTTGAGAGAAGAAAAACGTAAACATAGTACTATTGGCCAGAGGACAAGTTCCTTTGCTGTTGATGAGATGGACACTGGTGCGGATGGGGATGATGATGTTGTTGAACACAACCATCCTACTTCTTCAAGCTTGACAGATTCGTCTAATGGCTCTGGTTCAATGATACATGGCAGTTCATCAGATTACCAGAACTTTAAGAACCAGAAGCCGTCCAAAGGCAAATCAACCATAGTTGATAGCGGGTCTAAAATCGTCGTGAAAGCTACCTATGGAGAAGACACCATTCGTTTCAAGTTTGATCCATCCACAGGTTATTATAAACTATATGAAGAAGTTGCAACAAGATTCAAACTACAAGACGGGACATTCCAGCTCAAATATCTAGATGATGAAGAAGAATGGGTGATGTTAGTGAACGACTCAGATTTGCAAGTGTGTTTGGAAATATTGAATGATATGGGGACACATAATGCTAGGTTTCTTGTTCGCGACATGCCTTGCACTTTTGGCAGCTCTGGCAGTAGCAGTTGCTACTTGGGAGGCAGCTCATAG 2892 0.4153 MEYPFYPKGGGIGYWQSPGTQFEGPTSLDGGINNLVSEDMPNSFSELMNFDTYAGFCSGPSMTDQIMTNELPSLASVLYQSSDGFNPVEQNSGQFYGGNYNNLESSPIFGEKIVCQQMDTLLGVLDNSNDANNLSSRQKFDDPSQHVNGFDMGNYVIARPQALISRPPALSLDERMLKALSFFKESAGGGILAQVWVPIKHDGQVLLSTSEQPYLLDQMLAGYREVSRTFRFSTEGKPGCIPGLPGRVFISKVPEWTSNVGYYNPKEYLRAEHARNHEVRGSIAFPIFDLHSGLPCSAVLELVTTKEKLDFDRELEIICRSLQLVNLRTTVSSRLLPECLSTNKRAALTEIVDVLRSVCHAHRLPLALTWIPCFYTDGTRDETTRIQIKEGNSSSREKNILCIEESACYITDRVMEGFVRACIEHPLEEGNGVAGKALQSNHPFFYSDVKTYDISEYPLVHHARKFNLGAAVAIRLRSIYTNNDDYILEFFLPINMKGSSEQQLLLDSLSGTMQKICKSLRTVSGAEILETESSVVGFGKKNVPSFPPTSTRNSQISLINEKDGSVQKLSLDASNLRNNGNEPSCNQENNGSRRRVEKKRNTSEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRHHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSSGAFVAGGTTIQEINENKSRLFPERSTTQDSEPISQDAVSVPSEDENSENKLEGKLKETNTCSIDCSEDSKSFAMDDCPEQACIGSVLAKCDEWVLNNGGLREEKRKHSTIGQRTSSFAVDEMDTGADGDDDVVEHNHPTSSSLTDSSNGSGSMIHGSSSDYQNFKNQKPSKGKSTIVDSGSKIVVKATYGEDTIRFKFDPSTGYYKLYEEVATRFKLQDGTFQLKYLDDEEEWVMLVNDSDLQVCLEILNDMGTHNARFLVRDMPCTFGSSGSSSCYLGGSS 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04056 963 MobiDBLite consensus disorder prediction 706 723 - -
Mepo6g04056 963 MobiDBLite consensus disorder prediction 784 854 - -
Mepo6g04056 963 ProSiteProfiles RWP-RK domain profile. 586 674 IPR003035 -
Mepo6g04056 963 PANTHER PROTEIN NLP8 130 956 IPR045012 GO:0003700
Mepo6g04056 963 Pfam PB1 domain 865 943 IPR000270 GO:0005515
Mepo6g04056 963 Pfam RWP-RK domain 606 654 IPR003035 -
Mepo6g04056 963 MobiDBLite consensus disorder prediction 818 854 - -
Mepo6g04056 963 SMART PB1_new 863 945 IPR000270 GO:0005515
Mepo6g04056 963 MobiDBLite consensus disorder prediction 574 605 - -
Mepo6g04056 963 SUPERFAMILY CAD & PB1 domains 854 947 - -
Mepo6g04056 963 CDD PB1_NLP 866 944 IPR034891 -
Mepo6g04056 963 Gene3D - 860 946 - -
Mepo6g04056 963 MobiDBLite consensus disorder prediction 574 590 - -
Mepo6g04056 963 MobiDBLite consensus disorder prediction 700 734 - -
Mepo6g04056 963 ProSiteProfiles PB1 domain profile. 863 937 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04056 Mepo-Chr6 52826186 52834117 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04056 1 960 NLP Transcription Factor Family AT2G43500 49.182 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Mepo6g04056 PB1 1.5e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04056 - - gmx:100804426 1325.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g04056 6 52826186 52834117 Mepo6g04056 6 52826186 52834117 ECH
Mepo6g04056 6 52826186 52834117 Mepo2g02226 2 32031218 32037112 PCT