Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04037 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCTCCTGCAACAATGATTTGTTGTGCTGATGAAGCAGCTTTGTGTGCTAAATGTGATATTGAAGTTCATGCTGCTAACAAGCTTGCAAGCAAACATCAGAGGATTCATCTTCAATCTCTCTCTAACAAGCTCCCTAGATGTGACATATGCCAAGACAAGACAGCTTTCATATTTTGTGTTGAAGACAGGGCACTCTTTTGTGAGGATTGTGACGAATCGATTCATTTACCTGGAAGCCTTTCTGCAAATCACCAGCGCTTCCTTGCGACCGGTATCCAAGTGGCCATGAAATCTAACTGCGCCAAAGACGACGAAAAAACTCACTTGGAACCACCTAAGAGGAATACACATCAAGTTTCTCTTGAAGCTCCTTCTCAGCAAGTGCCTGACTTTACACCCCCTTGGGGTGTTGATGACTTATTGGAGTTAGCAGACTTTAATTCCCATGACAAAAAGGATTCCATGCAGTTTGGAGAGATGGAATGGTTCACAGAGGAGGGTCTTTTTGGTGATGACTTCACTCAAGAAGCCATGGCTGCAGCTGAAGTTCCTCAGCTTCCAGTAACTCATGCTAGCAACCATTATTCCTCCCACAGAATTTCCAAGTCACACATGTCTAACAAAAAGCCTAGAATTGAACTCATACGTGATTATGATTATGATGATGAAGATGAGTACTTCACCGTGCCTGATCTTGGCTGA 732 0.4303 MKIQCDVCEKAPATMICCADEAALCAKCDIEVHAANKLASKHQRIHLQSLSNKLPRCDICQDKTAFIFCVEDRALFCEDCDESIHLPGSLSANHQRFLATGIQVAMKSNCAKDDEKTHLEPPKRNTHQVSLEAPSQQVPDFTPPWGVDDLLELADFNSHDKKDSMQFGEMEWFTEEGLFGDDFTQEAMAAAEVPQLPVTHASNHYSSHRISKSHMSNKKPRIELIRDYDYDDEDEYFTVPDLG 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04037 243 CDD Bbox1_BBX-like 5 47 - -
Mepo6g04037 243 Gene3D Classic Zinc Finger 1 90 - -
Mepo6g04037 243 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 242 - -
Mepo6g04037 243 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Mepo6g04037 243 SMART bboxneu5 52 99 IPR000315 GO:0008270
Mepo6g04037 243 SMART bboxneu5 4 47 IPR000315 GO:0008270
Mepo6g04037 243 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Mepo6g04037 243 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Mepo6g04037 243 CDD Bbox1_BBX-like 57 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04037 Mepo-Chr6 52638688 52641121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04037 1 161 Orphan Transcription Factor Family AT1G06040 64.118 2.55e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mepo6g04037 zf-B_box 1.6e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g04037 6 52638688 52641121 Mepo6g04037 6 52638688 52641121 ECH
Mepo6g04037 6 52638688 52641121 Mepo2g02213 2 31920192 31923194 PCT