Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04020 ATGGATTCTGATGATATGCACGATGCCAACGATGTTGAATCCCTCGATGATGATTTCTACAGTGGTGAAACCGAAGATGCTCCCATGGATGACTACAGCGACGACTACGATGATGATAATAATAATAATAATAATAATGATGCTGATGATGATTACTTTGATGATGGTGCTGATGATTCTGCTCAGTCTCGGAGTACTGAGATAAATTTTGCCATATTGAAAGAATCAGATATCCGGGAACGGCAGGAAGATGATATTAGTAGTGTTGCAGCAGTTCTTTCCATACCACCAGTTGCTGCAAGCATCCTACTTCGTCATTACAATTGGAATGTTAGTAATGTTAATGATGCTTGGTTTGCTGACGAAGACAGAGTCCGAAGAAATGTTGGCCTGTTGGAGAAGCCAGTTTACGAGAATCCTGATGCTAAAGAGCTTACTTGCGGCATCTGTTTTGAAGCTTATCGTCCTTCTAAGATTCACAGTGCTTCTTGCGGTCATCCGTACTGTTTTTCATGCTGGGGAGGATATATTGGCACTTCAATTAACGATGGTCCTGGATGCTTGATGCTGAGATGTCCTGATCCTGCTTGTGGTGCTGCTGTTGATCAAGATATGATTAATCTTTTAGCATCTGCTGAAGATAAACAGAAGTATGACCGTTACCTTATTAGATCTTACATTGAAGACAATAAAAAGACCAAGTGGTGTCCTGCTCCTGGTTGTGAACATGCAGTTAATTTTGATGCTGGTGGTGAAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACTGAAGAGGCTCACCGTCCAGTGGATTGTGGCACAGTGTCAAAGTGGATTTTGAAAAACAGTGCAGAATCCGAAAACATGAACTGGATACTTGCTAACTCGAAGCCGTGTCCCAAGTGCAAGAGACCAATTGAAAAAAACCAAGGGTGCATGCATATGACATGTACTCCACCTTGCAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGCGGTTTCTACGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGGGTGTATGATGAAACTGAAAAAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGGTACACACATTATTATGAGCGGTGGGCTAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCTGATCTACACCAGATGCAAACTGTTCATATGGAGAAGCTTAGTGACACACAATGCCAACCTGAGTCACAACTTAAGTTCATAACCGAGGCTTGGTTACAGATAGTTGAGTGCAGGCGAGTATTGAAGTGGACATATGCATATGGGTACTATTTAGCCGAGCATGAGCATGCTAAAAAGCAGTTCTTTGAGTACTTGCAAGGTGAGGCAGAATCAGGTTTGGAGAGACTTCATCAATGCGCCGAAAAGGAACTCCAAGTATTCCTCGGTGCTGAAGGCCCGTCTAAAGAATTCAACGATTTTCGCACCAAACTAGCTGGATTGACCAGTGTGACTAAAAACTTCTTCGAGAATTTGGTTAGGGCATTAGAGAATGGTTTATGTGATGTGGATAGTAATGGAGCTGCTACAAGCAAGGCAACAAGTTCAAAAAATGCGGCAGGGAGCAGTAAGGGAAAAAGCGGAAGAGGAAAGGGGACGAAAGCTACCGTGTCCAGCAGATTAACTGATGATAATGAGTGGTCTTGTGAGCAATGTACCTATGCAAATGTCGGATCTGCCACCGCATGCGCGATGTGCAATCAAGAGCGACAATGA 1794 0.4292 MDSDDMHDANDVESLDDDFYSGETEDAPMDDYSDDYDDDNNNNNNNDADDDYFDDGADDSAQSRSTEINFAILKESDIRERQEDDISSVAAVLSIPPVAASILLRHYNWNVSNVNDAWFADEDRVRRNVGLLEKPVYENPDAKELTCGICFEAYRPSKIHSASCGHPYCFSCWGGYIGTSINDGPGCLMLRCPDPACGAAVDQDMINLLASAEDKQKYDRYLIRSYIEDNKKTKWCPAPGCEHAVNFDAGGENYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETEKRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHMEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLAEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLGAEGPSKEFNDFRTKLAGLTSVTKNFFENLVRALENGLCDVDSNGAATSKATSSKNAAGSSKGKSGRGKGTKATVSSRLTDDNEWSCEQCTYANVGSATACAMCNQERQ 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04020 597 SUPERFAMILY RING/U-box 297 345 - -
Mepo6g04020 597 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 444 IPR031127 GO:0004842|GO:0016567
Mepo6g04020 597 FunFam RBR-type E3 ubiquitin transferase 141 230 - -
Mepo6g04020 597 CDD Rcat_RBR_ARI7-like 301 355 - -
Mepo6g04020 597 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 227 IPR013083 -
Mepo6g04020 597 SUPERFAMILY RING/U-box 217 285 - -
Mepo6g04020 597 ProSiteProfiles Zinc finger RanBP2 type profile. 569 597 IPR001876 -
Mepo6g04020 597 SMART ibrneu5 216 278 IPR002867 GO:0008270
Mepo6g04020 597 SMART ibrneu5 291 352 IPR002867 GO:0008270
Mepo6g04020 597 MobiDBLite consensus disorder prediction 1 62 - -
Mepo6g04020 597 SUPERFAMILY RING/U-box 142 228 - -
Mepo6g04020 597 Gene3D - 567 597 - -
Mepo6g04020 597 ProSiteProfiles Zinc finger RING-type profile. 147 191 IPR001841 -
Mepo6g04020 597 SMART zf_4 571 595 IPR001876 -
Mepo6g04020 597 CDD BRcat_RBR_ANKIB1 223 287 - -
Mepo6g04020 597 MobiDBLite consensus disorder prediction 535 549 - -
Mepo6g04020 597 Pfam Ariadne domain 365 528 IPR045840 -
Mepo6g04020 597 ProSitePatterns Zinc finger RanBP2-type signature. 573 592 IPR001876 -
Mepo6g04020 597 MobiDBLite consensus disorder prediction 1 56 - -
Mepo6g04020 597 ProSiteProfiles TRIAD supradomain profile. 143 356 IPR044066 -
Mepo6g04020 597 MobiDBLite consensus disorder prediction 535 565 - -
Mepo6g04020 597 Pfam IBR domain, a half RING-finger domain 216 278 IPR002867 GO:0008270
Mepo6g04020 597 Pfam IBR domain, a half RING-finger domain 295 343 IPR002867 GO:0008270
Mepo6g04020 597 SUPERFAMILY Ran binding protein zinc finger-like 570 596 IPR036443 -
Mepo6g04020 597 FunFam RBR-type E3 ubiquitin transferase 279 529 - -
Mepo6g04020 597 Gene3D - 274 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04020 Mepo-Chr6 52461289 52468327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04020 16 596 ARIADNE family AT1G65430 67.863 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04020 K11968 - gmx:100810427 1026.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g04020 6 52461289 52468327 Mepo6g04020 6 52461289 52468327 ECH
Mepo6g04020 6 52461289 52468327 Mepo2g02192 2 31682864 31690378 PCT