Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04000 ATGGAGTCAGATCTTCATCAACAACAACAACAACCACAAGTAAATTCTTCAGGTTTAACAAGGTTTAAATCAGCACCAAGTTCATATTTCAACAACATCATTGACAGAGAATTCTACGAGCATGTTTTCAATAAACCATCAAGTCCAGAAACAGAGCGAGTTTTTTCAAGGTTTATTAACAGTTTTGGTTCAGAAGATGATTTACTAGCTCAAAAAATCTCAGTAGATTCAACAGTGAAAGAAGAAGAAGAGGTTAATATTAATCAACAACAACAACAACAACAACAAGATCAGGGTTTGGCTTCAATCAACAATGAACATGTGGTTCATCAGCAGAGTAATATCAATATCAATATCAGTAATAATAATTATAACAACTCTGTTCCTTCTTCTCATGGTTTTTATCAAAGCTCTATGATGCCACCTTTGCCAAATCAGAATGTTTCTTCTGGTTTAGATGGAAGCTTTTCAATGGGAGTTAATAGGTTGCAGCAGGTGAAGAATCATGGTGGAAATAATTCAAATCTTATTAGACATAGTAGTTCACCAGCTGGATTATTTTCTCAAATCAACATTGAAAATGGTTATGTTAGTATGAGAGGAATGGGAACTTTAGGAGCTGTTAATAACTCTATGAAAGAAGCAAAATTTTCTACTGCAAGGAATTTGAAGAATCAATCAAACTATTCATCAGGGTTAATGTCAACAATAGCTGAAGTTGGTGACAAAGGCAATAGAGAAAATAATGAAGAAAATGAAGCTTTTGGCGAAAGTCATGGTAACGAATATATGGATTATCAGGTTGATACTTGGGATGATTCTGAAATGATGTCTGAAAATGTTGGTGGTTTAAAGAGATTTAGAGATAATGATTCAAAACAACAATTTTCTGGTTTAAATGTTCAGAATGAAACAGGAGGAGGACATTCTAATTCTCCTTTAGCTCATCAACTGAGTATGCCAAATACTTCATCTGAAATGGCAGCTATGGAGAAGTTTCTGCATTTCTCAGATTCTGTTCCGATGAAAATTCGCGCCAAGCGAGGTTGTGCTACTCACCCAAGAAGCATTGCAGAAAGGGTTAGAAGGACTAAAATTAGTGAGCGTATGAGGAAGCTACAAGATCTGGTCCCAAACATGGATAAGCAAACAAACACAGCAGATATGTTGGACTTGGCTGTGGATTACATCAAAGACCTTCAAAAGCAAGCTCAGGTATTTCAAAAATTCAATATCTCACCTATATCTATATATATCTTTATCTTATTTGTCATTATAAATTATTACCTAATTAATTTTCTTCTCACACATGCATATATCTATATATACACTTGTATAGAAGCTTCAAGATTGTCAAGCAAAGTGTACGTGCCCACACAAGCAGCAACAACAACAATAACCGCAAAGAGTGAATTAATTAATTAG 1425 0.3446 MESDLHQQQQQPQVNSSGLTRFKSAPSSYFNNIIDREFYEHVFNKPSSPETERVFSRFINSFGSEDDLLAQKISVDSTVKEEEEVNINQQQQQQQQDQGLASINNEHVVHQQSNININISNNNYNNSVPSSHGFYQSSMMPPLPNQNVSSGLDGSFSMGVNRLQQVKNHGGNNSNLIRHSSSPAGLFSQINIENGYVSMRGMGTLGAVNNSMKEAKFSTARNLKNQSNYSSGLMSTIAEVGDKGNRENNEENEAFGESHGNEYMDYQVDTWDDSEMMSENVGGLKRFRDNDSKQQFSGLNVQNETGGGHSNSPLAHQLSMPNTSSEMAAMEKFLHFSDSVPMKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQAQVFQKFNISPISIYIFILFVIINYYLINFLLTHAYIYIYTCIEASRLSSKVYVPTQAATTTITAKSELIN 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04000 474 MobiDBLite consensus disorder prediction 1 21 - -
Mepo6g04000 474 FunFam Transcription factor bHLH130 family 351 413 - -
Mepo6g04000 474 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 400 IPR011598 GO:0046983
Mepo6g04000 474 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 125 408 - -
Mepo6g04000 474 Gene3D - 351 413 IPR036638 GO:0046983
Mepo6g04000 474 SMART finulus 356 406 IPR011598 GO:0046983
Mepo6g04000 474 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 411 IPR036638 GO:0046983
Mepo6g04000 474 Pfam Helix-loop-helix DNA-binding domain 355 401 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04000 Mepo-Chr6 52242325 52246027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04000 5 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 38.038 1.97e-64 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo6g04000 HLH 6.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04000 - - gmx:100806368 494.582