Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03979 ATGAGAAAGCCAGAGATTTCTAGTGCTAAAAACAACAACAATACTAATAAGAAGAAGCTTAGAAAAGGGTTGTGGTCACCAGAAGAAGATGAGAAACTTATGAACTATATGGTAAGGAATGGACAAGGATGTTGGAGTGATGTGGCAAGAAATGCTGGATTGGAAAGGTGTGGCAAAAGTTGTAGGCTAAGATGGATCAATTACTTGAGGCCTGATCTTAAAAGAGGTGCTTTCTCAACACAAGAAGAAGAACTCATCATCCATTTCCATTCTCTACTTGGAAACAGATGGTCTCAAATAGCAGCACGATTGCCAGGGAGAACCGACAATGAAATAAAAAACTTTTGGAATTCAACTATAAAGAAAAGACTTAAGAACTTGTCTTCAACCTCACCAAATCCAAGTGATGAGTCCTCACCTGAACCTAACAAAGATTTCAATATACAACAAGGGTCCTATATTTCTACACAACATGCAAATTACAACAACTACATGAGTATGCCTATGTTCACTTCATCATCATCTCCATCACCATCAATATTTCAAAACACAATTTTCAATACCATGAATATTGACACGTTGCCTATGCTGGATCATAGTGGATACTTCAACAATACAGTTACTACATTGCCATGCTTTTCGTCACAAAGTCATGAAGTTGAAATTAAAGGTTCTTATTTAGAAAATGGTGTGTTTGGGAATGTAAATATTGGAGTAGAAAGGGATATGGAGAATAAGTGCAACACAAAAACTAACCCTAACCATTCTGATTATTATTTTGATGACATAAAGATAAACAATATGCTTAGTAACTGCAATATTATTGAAAGCAATAATAATAATAATAAAATTGAAAGTAGGGGTGAGGTAGTGGAGAATTTATTTCAAGAACAATTCAACTTGGGAGAGTGGGATTTTGAGGAGTTGATGAAAGATGTTTCCTCCTTTTTATTTTCTTGA 960 0.349 MRKPEISSAKNNNNTNKKKLRKGLWSPEEDEKLMNYMVRNGQGCWSDVARNAGLERCGKSCRLRWINYLRPDLKRGAFSTQEEELIIHFHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSTSPNPSDESSPEPNKDFNIQQGSYISTQHANYNNYMSMPMFTSSSSPSPSIFQNTIFNTMNIDTLPMLDHSGYFNNTVTTLPCFSSQSHEVEIKGSYLENGVFGNVNIGVERDMENKCNTKTNPNHSDYYFDDIKINNMLSNCNIIESNNNNNKIESRGEVVENLFQEQFNLGEWDFEELMKDVSSFLFS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03979 319 FunFam MYB transcription factor 19 75 - -
Mepo6g03979 319 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Mepo6g03979 319 MobiDBLite consensus disorder prediction 126 148 - -
Mepo6g03979 319 FunFam Transcription factor MYB46 76 145 - -
Mepo6g03979 319 PANTHER MYB DOMAIN PROTEIN 55 14 280 - -
Mepo6g03979 319 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Mepo6g03979 319 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Mepo6g03979 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Mepo6g03979 319 CDD SANT 25 69 IPR001005 -
Mepo6g03979 319 MobiDBLite consensus disorder prediction 1 24 - -
Mepo6g03979 319 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Mepo6g03979 319 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Mepo6g03979 319 Gene3D - 76 147 - -
Mepo6g03979 319 Gene3D - 22 74 - -
Mepo6g03979 319 SMART sant 74 122 IPR001005 -
Mepo6g03979 319 SMART sant 21 71 IPR001005 -
Mepo6g03979 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Mepo6g03979 319 CDD SANT 77 117 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03979 Mepo-Chr6 52043318 52045057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03979 1 130 MYB Transcription Factor Family AT5G12870 80.000 1.19e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo6g03979 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03979 K09422 - gmx:100785810 343.584